Browse Element(s) Details


OsAffx.7699.1.S1_at

Description tigr:9640.m02463
TID=OsAffx.7699.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2575011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25710Os.6059.1.S1_at11/1112+14894490..14902028Bifunctional aminoacyl-tRNA synthetase, putative, expressed
LOC_Os12g25720Os.54701.1.S1_at10/1112+14909584..14913966expressed protein
LOC_Os12g25734NANA12+14920973..14924804retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25750OsAffx.7699.1.S1_at11/1112+14926760..14927694hypothetical protein
LOC_Os12g25760NANA12+14930534..14931309hypothetical protein
LOC_Os12g25770OsAffx.7700.1.S1_at11/1112+14942532..14942807hypothetical protein
LOC_Os12g25770OsAffx.7700.1.S1_x_at11/1112+14942532..14942807hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7699.1.S1_at--898--3291Chr12:14927181..14927205 (25 bp)
CAAATTAGGATGATGCCTGCTGCTA
LOC_Os12g25750
OsAffx.7699.1.S1_at--675--6351Chr12:14927192..14927216 (25 bp)
GATGCCTGCTGCTAGGATGCCACAG
LOC_Os12g25750
OsAffx.7699.1.S1_at--908--7971Chr12:14927206..14927230 (25 bp)
GGATGCCACAGGTTGTCTTGGCCGA
LOC_Os12g25750
OsAffx.7699.1.S1_at--263--2131Chr12:14927213..14927234 (22 bp)
ACAGGTTGTCTTGGCCGACCGGAGA
LOC_Os12g25750
OsAffx.7699.1.S1_at--384--6191Chr12:14927535..14927559 (25 bp)
GAGGACTCAGAGTTCAGCATTGTCG
LOC_Os12g25750
OsAffx.7699.1.S1_at--474--9651Chr12:14927541..14927565 (25 bp)
TCAGAGTTCAGCATTGTCGGAGATG
LOC_Os12g25750
OsAffx.7699.1.S1_at--1134--8711Chr12:14927555..14927579 (25 bp)
TGTCGGAGATGCAAGACGGTGACCA
LOC_Os12g25750
OsAffx.7699.1.S1_at--586--8371Chr12:14927591..14927615 (25 bp)
GGCGATGCATGGACGAAGCTGACTC
LOC_Os12g25750
OsAffx.7699.1.S1_at--903--5391Chr12:14927605..14927629 (25 bp)
GAAGCTGACTCGGTGAAACCTGACA
LOC_Os12g25750
OsAffx.7699.1.S1_at--120--8971Chr12:14927618..14927642 (25 bp)
TGAAACCTGACATCCGACGGGCCAA
LOC_Os12g25750
OsAffx.7699.1.S1_at--243--5751Chr12:14927633..14927657 (25 bp)
GACGGGCCAACGATATGGGCTGCAC
LOC_Os12g25750
Target Sequence 
CAAATTAGGATGATGCCTGCTGCTAGGATGCCACAGGTTGTCTTGGCCGACCGGAGATGGCGAGTTTGTGATAGGGGCAG
AGTGAGCCCAATGGGGAGGAGGACTCAGAGTTCAGCATTGTCGGAGATGCAAGACGGTGACCAGGATTGGAGGAGGCGAT
GCATGGACGAAGCTGACTCGGTGAAACCTGACATCCGACGGGCCAACGATATGGGCTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis