Browse Element(s) Details


OsAffx.7704.1.S1_at

Description tigr:9640.m02492
TID=OsAffx.7704.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2603011/11metallopeptidase family M24 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g26000OsAffx.1197.1.S1_x_at3/1112+15095995..15096339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26010NANA12+15108914..15110887retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g26020OsAffx.31885.2.S1_x_at11/1112+15111850..15115162hypothetical protein
LOC_Os12g26020OsAffx.29789.3.S1_x_at1/1112+15111850..15115162hypothetical protein
LOC_Os12g26020OsAffx.29789.1.S1_x_at1/1112+15111850..15115162hypothetical protein
LOC_Os12g26030OsAffx.7704.1.S1_s_at11/1112+15118511..15121918metallopeptidase family M24 containing protein, expressed
LOC_Os12g26030OsAffx.7704.1.S1_at11/1112+15118511..15121918metallopeptidase family M24 containing protein, expressed
LOC_Os12g26040OsAffx.19831.1.S1_at11/1112+15124017..15125336expressed protein
LOC_Os12g26050OsAffx.19832.1.S1_at11/1112+15129078..15129791hypothetical protein
LOC_Os12g26060Os.48077.1.A1_at10/1112+15131743..15137678Bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed
LOC_Os12g26070Os.47463.1.S1_x_at6/1112+15138429..15143628transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g26070Os.14491.2.S1_x_at5/1112+15138429..15143628transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g26080NANA12+15146443..15151689transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7704.1.S1_at--598--2331Chr12:15121328..15121352 (25 bp)
AAAGAGTCAGACGAGAACAATAGGT
LOC_Os12g26030
OsAffx.7704.1.S1_at--805--9631Chr12:15121334..15121358 (25 bp)
TCAGACGAGAACAATAGGTGGGAGT
LOC_Os12g26030
OsAffx.7704.1.S1_at--265--1431Chr12:15121341..15121365 (25 bp)
AGAACAATAGGTGGGAGTTCTTGAA
LOC_Os12g26030
OsAffx.7704.1.S1_at--236--1231Chr12:15121356..15121380 (25 bp)
AGTTCTTGAACCCAGATGCTAGCGA
LOC_Os12g26030
OsAffx.7704.1.S1_at--484--10551Chr12:15121358..15121382 (25 bp)
TTCTTGAACCCAGATGCTAGCGACT
LOC_Os12g26030
OsAffx.7704.1.S1_at--1062--10731Chr12:15121361..15121385 (25 bp)
TTGAACCCAGATGCTAGCGACTCGG
LOC_Os12g26030
OsAffx.7704.1.S1_at--1113--8971Chr12:15121362..15121386 (25 bp)
TGAACCCAGATGCTAGCGACTCGGA
LOC_Os12g26030
OsAffx.7704.1.S1_at--976--1851Chr12:15121500..15121524 (25 bp)
ACGACGGTGCCATGGATGGTTCAGA
LOC_Os12g26030
OsAffx.7704.1.S1_at--299--1931Chr12:15121503..15121527 (25 bp)
ACGGTGCCATGGATGGTTCAGAAGA
LOC_Os12g26030
OsAffx.7704.1.S1_at--805--7391Chr12:15121536..15121560 (25 bp)
GTGATGCTGCCGAATCGTGGGATGA
LOC_Os12g26030
OsAffx.7704.1.S1_at--1036--3811Chr12:15121542..15121566 (25 bp)
CTGCCGAATCGTGGGATGAGATGGA
LOC_Os12g26030
Target Sequence 
AAAGAGTCAGACGAGAACAATAGGTGGGAGTTCTTGAACCCAGATGCTAGCGACTCGGACTCGGAGAGCTCACAGACAGA
AGATGATCAGTATGAACCATCAGATGCCGACTCATGCTCTGAATCGGATGACGAAGACAGTGACAGTGAATCTGTGGTGG
ATTCTGGTGAAGACGACGGTGCCATGGATGGTTCAGAAGATGATGGTGGTGATGCTGCCGAATCGTGGGATGAGATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7704.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis