Browse Element(s) Details


OsAffx.7704.1.S1_s_at

Description tigr:9640.m02492
TID=OsAffx.7704.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2603011/11metallopeptidase family M24 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g26000OsAffx.1197.1.S1_x_at3/1112+15095995..15096339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26010NANA12+15108914..15110887retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g26020OsAffx.31885.2.S1_x_at11/1112+15111850..15115162hypothetical protein
LOC_Os12g26020OsAffx.29789.3.S1_x_at1/1112+15111850..15115162hypothetical protein
LOC_Os12g26020OsAffx.29789.1.S1_x_at1/1112+15111850..15115162hypothetical protein
LOC_Os12g26030OsAffx.7704.1.S1_s_at11/1112+15118511..15121918metallopeptidase family M24 containing protein, expressed
LOC_Os12g26030OsAffx.7704.1.S1_at11/1112+15118511..15121918metallopeptidase family M24 containing protein, expressed
LOC_Os12g26040OsAffx.19831.1.S1_at11/1112+15124017..15125336expressed protein
LOC_Os12g26050OsAffx.19832.1.S1_at11/1112+15129078..15129791hypothetical protein
LOC_Os12g26060Os.48077.1.A1_at10/1112+15131743..15137678Bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed
LOC_Os12g26070Os.47463.1.S1_x_at6/1112+15138429..15143628transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g26070Os.14491.2.S1_x_at5/1112+15138429..15143628transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g26080NANA12+15146443..15151689transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7704.1.S1_s_at--234--2011Chr12:15121380..15121404 (25 bp)
ACTCGGACTCGGAGAGCTCACAGAC
LOC_Os12g26030
OsAffx.7704.1.S1_s_at--272--411Chr12:15121413..15121437 (25 bp)
ATCAGTATGAACCATCAGATGCCGA
LOC_Os12g26030
OsAffx.7704.1.S1_s_at--327--1291Chr12:15121429..15121453 (25 bp)
AGATGCCGACTCATGCTCTGAATCG
LOC_Os12g26030
OsAffx.7704.1.S1_s_at--737--5551Chr12:15121642..15121666 (25 bp)
GAAAGCACTGGCCAAGTCTCGGTGT
LOC_Os12g26030
OsAffx.7704.1.S1_s_at--317--2851Chr12:15121655..15121679 (25 bp)
AAGTCTCGGTGTCCTAGTCATCCAC
LOC_Os12g26030
OsAffx.7704.1.S1_s_at--487--3311Chr12:15121677..15121701 (25 bp)
CACAGGCCAAGGGTGCTGCGCACAA
LOC_Os12g26030
OsAffx.7704.1.S1_s_at--1047--8231Chr12:15121704..15121728 (25 bp)
GGCAGCGAATTAACTAGTTCTCAGA
LOC_Os12g26030
OsAffx.7704.1.S1_s_at--592--2831Chr12:15121735..15121759 (25 bp)
AAGTTTAGCTTGTTCTTGTGGCACT
LOC_Os12g26030
OsAffx.7704.1.S1_s_at--1102--8231Chr12:15121754..15121778 (25 bp)
GGCACTTTATTATGCATCTGTCGCT
LOC_Os12g26030
OsAffx.7704.1.S1_s_at--1109--471Chr12:15121769..15121793 (25 bp)
ATCTGTCGCTTTTTACCTGTCGTTA
LOC_Os12g26030
OsAffx.7704.1.S1_s_at--642--9971Chr12:15121782..15121806 (25 bp)
TACCTGTCGTTAGTTTCGGTGGTGA
LOC_Os12g26030
Target Sequence 
ACTCGGACTCGGAGAGCTCACAGACAGAAGATGATCAGTATGAACCATCAGATGCCGACTCATGCTCTGAATCGGATGAC
GAAGACAGTGACAGTGAATCTGTGGTGGATTCTGGTGAAGACGACGGTGCCATGGATGGTTCAGAAGATGATGGTGGTGA
TGCTGCCGAATCGTGGGATGAGATGGAGCGCAAGGCGAGGGACGCCGACATGGAGATGGGCAGTGAGTCGGACAGCGAAG
ACGAGAGGCAGCGGCGAAGGGAGAAAGCACTGGCCAAGTCTCGGTGTCCTAGTCATCCACAGGCCAAGGGTGCTGCGCAC
AAGAGGCAGCGAATTAACTAGTTCTCAGATAATGGAAGTTTAGCTTGTTCTTGTGGCACTTTATTATGCATCTGTCGCTT
TTTACCTGTCGTTAGTTTCGGTGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7704.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis