Browse Element(s) Details


OsAffx.7705.1.S1_at

Description tigr:9640.m02523
TID=OsAffx.7705.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2633011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g26310NANA12+15348960..15357048retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g26320OsAffx.19794.1.S1_at1/1112+15360408..15365487retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26330OsAffx.7705.1.S1_at11/1112+15371750..15372052hypothetical protein
LOC_Os12g26340OsAffx.22848.3.S1_x_at1/1112+15384242..15390373retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26350OsAffx.31889.1.S1_at11/1112+15394827..15395429hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7705.1.S1_at--690--8631Chr12:15371799..15371823 (25 bp)
TGGGCCTTTGGCTCCATGTCATTCC
LOC_Os12g26330
OsAffx.7705.1.S1_at--1143--10231Chr12:15371805..15371829 (25 bp)
TTTGGCTCCATGTCATTCCCGCACT
LOC_Os12g26330
OsAffx.7705.1.S1_at--1158--9031Chr12:15371838..15371862 (25 bp)
TGCAGCGTGAGGGCCATGCCAGCAC
LOC_Os12g26330
OsAffx.7705.1.S1_at--378--591Chr12:15371853..15371877 (25 bp)
ATGCCAGCACTGATGCTCTGCCACA
LOC_Os12g26330
OsAffx.7705.1.S1_at--360--9491Chr12:15371869..15371893 (25 bp)
TCTGCCACACACTGCGCTTGGGATG
LOC_Os12g26330
OsAffx.7705.1.S1_at--741--2191Chr12:15371875..15371899 (25 bp)
ACACACTGCGCTTGGGATGAGCACA
LOC_Os12g26330
OsAffx.7705.1.S1_at--223--3831Chr12:15371880..15371904 (25 bp)
CTGCGCTTGGGATGAGCACAACGTG
LOC_Os12g26330
OsAffx.7705.1.S1_at--1014--8091Chr12:15371904..15371928 (25 bp)
GGACCATCTCCAGATTCCTAACGAG
LOC_Os12g26330
OsAffx.7705.1.S1_at--23--9231Chr12:15371912..15371936 (25 bp)
TCCAGATTCCTAACGAGGAGGGCGC
LOC_Os12g26330
OsAffx.7705.1.S1_at--321--1091Chr12:15371930..15371954 (25 bp)
AGGGCGCCGCAGAGCACAGGCTATT
LOC_Os12g26330
OsAffx.7705.1.S1_at--181--2135Chr12:15371945..15371969 (25 bp)
ACAGGCTATTGTTGTCGGTCTCACA
LOC_Os12g26330
Target Sequence 
TGGGCCTTTGGCTCCATGTCATTCCCGCACTCGTCGCGCTGCAGCGTGAGGGCCATGCCAGCACTGATGCTCTGCCACAC
ACTGCGCTTGGGATGAGCACAACGTGGACCATCTCCAGATTCCTAACGAGGAGGGCGCCGCAGAGCACAGGCTATTGTTG
TCGGTCTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7705.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis