Browse Element(s) Details


OsAffx.7718.1.S1_at

Description tigr:9640.m02662
TID=OsAffx.7718.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2769011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27680OsAffx.19857.1.S1_at11/1112+16305719..16306579hypothetical protein
LOC_Os12g27690OsAffx.7718.1.S1_at11/1112+16327531..16329272hypothetical protein
LOC_Os12g27700NANA12+16330720..16333695retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27710NANA12+16334011..16340121retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27720OsAffx.7719.1.S1_at11/1112+16345879..16346346hypothetical protein
LOC_Os12g27730OsAffx.19542.3.S1_x_at3/1112+16349666..16353605retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7718.1.S1_at--281--3891Chr12:16328828..16328852 (25 bp)
CTGTGGTACAATGCCACGGTGGCCG
LOC_Os12g27690
OsAffx.7718.1.S1_at--293--7871Chr12:16328916..16328940 (25 bp)
GGTTTCCCGTCCGTGGCATCCATGT
LOC_Os12g27690
OsAffx.7718.1.S1_at--446--7531Chr12:16328928..16328952 (25 bp)
GTGGCATCCATGTCGACGTTCCTTC
LOC_Os12g27690
OsAffx.7718.1.S1_at--574--8411Chr12:16328957..16328981 (25 bp)
GGCCCCATCTACTTCGATGTCGGCG
LOC_Os12g27690
OsAffx.7718.1.S1_at--139--10511Chr12:16328987..16329011 (25 bp)
TTCAAGCACTGGGCTGGCGCACGGT
LOC_Os12g27690
OsAffx.7718.1.S1_at--1069--5011Chr12:16329028..16329052 (25 bp)
GCAGTGCCGGTGTGTTCGACCTCCG
LOC_Os12g27690
OsAffx.7718.1.S1_at--178--2911Chr12:16329072..16329096 (25 bp)
AAGGAGGTCGACGTTGCCGCCTTGC
LOC_Os12g27690
OsAffx.7718.1.S1_at--389--9191Chr12:16329130..16329154 (25 bp)
TGCCACCGGAGCAGACCGAGCTCGT
LOC_Os12g27690
OsAffx.7718.1.S1_at--131--9311Chr12:16329158..16329182 (25 bp)
TCCGCCGGCTCACGAAATACCAAGA
LOC_Os12g27690
OsAffx.7718.1.S1_at--357--491Chr12:16329182..16329206 (25 bp)
ATCTGGCAGGCCTCTGCTCGGGCTG
LOC_Os12g27690
OsAffx.7718.1.S1_at--243--9491Chr12:16329194..16329218 (25 bp)
TCTGCTCGGGCTGTTCCTGTTGGTG
LOC_Os12g27690
Target Sequence 
CTGTGGTACAATGCCACGGTGGCCGGGGTCATCAGCTACAGCCGGATCGCATCGCTGTCGGGCGTCTCCGTGCAGGACCT
CTTCCTCTGGTTTCCCGTCCGTGGCATCCATGTCGACGTTCCTTCCTCCGGCCCCATCTACTTCGATGTCGGCGTCGTGT
TCAAGCACTGGGCTGGCGCACGGTGAAGGGGGTGGCCGCCGCAGTGCCGGTGTGTTCGACCTCCGCGCCGCCGCGACGGT
GGGGAAGGAGGTCGACGTTGCCGCCTTGCTCCATGTCCTGCCGCTCTCGCCGCCGCCTCCGCTGCCACCGGAGCAGACCG
AGCTCGTCGATCCGCCGGCTCACGAAATACCAAGATCTGGCAGGCCTCTGCTCGGGCTGTTCCTGTTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis