Browse Element(s) Details


OsAffx.7719.1.S1_at

Description tigr:9640.m02665
TID=OsAffx.7719.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2772011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27690OsAffx.7718.1.S1_at11/1112+16327531..16329272hypothetical protein
LOC_Os12g27700NANA12+16330720..16333695retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27710NANA12+16334011..16340121retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27720OsAffx.7719.1.S1_at11/1112+16345879..16346346hypothetical protein
LOC_Os12g27730OsAffx.19542.3.S1_x_at3/1112+16349666..16353605retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g27740OsAffx.7720.1.S1_at11/1112+16357983..16358513hypothetical protein
LOC_Os12g27750OsAffx.31905.1.S1_at11/1112+16361924..16363303F-box domain containing protein
LOC_Os12g27760OsAffx.19858.2.S1_at11/1112+16365231..16366466F-box domain containing protein
LOC_Os12g27770OsAffx.31222.2.S1_at8/1112+16367409..16370946transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g27770OsAffx.31222.2.S1_x_at7/1112+16367409..16370946transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g27770OsAffx.31222.1.S1_at4/1112+16367409..16370946transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7719.1.S1_at--207--8131Chr12:16346283..16346307 (25 bp)
GGACATCTGGACGATGAACCTCCTC
LOC_Os12g27720
OsAffx.7719.1.S1_at--481--8531Chr12:16346276..16346300 (25 bp)
TGGACGATGAACCTCCTCCACAGGA
LOC_Os12g27720
OsAffx.7719.1.S1_at--418--2111Chr12:16346257..16346281 (25 bp)
ACAGGACGGCCTTGCGCCGAATGGC
LOC_Os12g27720
OsAffx.7719.1.S1_at--916--9471Chr12:16346099..16346123 (25 bp)
TCTGCTTGCTTTGCTGGACCGGCGT
LOC_Os12g27720
OsAffx.7719.1.S1_at--542--6211Chr12:16346044..16346068 (25 bp)
GAGGCGTTCAGCGAGTTTCGCTCTG
LOC_Os12g27720
OsAffx.7719.1.S1_at--165--4211Chr12:16346015..16346039 (25 bp)
CCGCCATGTGTTGCCGCCATATGAG
LOC_Os12g27720
OsAffx.7719.1.S1_at--815--4431Chr12:16346000..16346024 (25 bp)
GCCATATGAGGTGGGTTTGTCCAGT
LOC_Os12g27720
OsAffx.7719.1.S1_at--590--4291Chr12:16345968..16345992 (25 bp)
CCTCGATTTCTCCATGATTTCATTC
LOC_Os12g27720
OsAffx.7719.1.S1_at--820--7611Chr12:16345935..16345959 (25 bp)
GGGAACGTGAAGTCGCAACACAATT
LOC_Os12g27720
OsAffx.7719.1.S1_at--1041--8991Chr12:16345928..16345952 (25 bp)
TGAAGTCGCAACACAATTTCGCCAC
LOC_Os12g27720
OsAffx.7719.1.S1_at--668--2231Chr12:16345916..16345940 (25 bp)
ACAATTTCGCCACCCGCAGTTTTGC
LOC_Os12g27720
Target Sequence 
GGACATCTGGACGATGAACCTCCTCCACAGGACGGCCTTGCGCCGAATGGCGTGCACCAAGGTCATCGACTTGACGGGAG
TACCCCGGAGTCCCTGCACGCCGCCGGTGTCAGAGTTGGAGATGGCGCGTTCCTGTGGTCCGGCGATGCGAGCAGCGGCG
TGGTGCTCCGGCTCGGGTGGACGGTCTGCTTGCTTTGCTGGACCGGCGTCGGCGCGCCATTGTGGTCTGCGCGCTCGGCG
AGGCGTTCAGCGAGTTTCGCTCTGGGCGCCGCCATGTGTTGCCGCCATATGAGGTGGGTTTGTCCAGTTGGGTTCCCTCG
ATTTCTCCATGATTTCATTCGTCGGCTGGGGAACGTGAAGTCGCAACACAATTTCGCCACCCGCAGTTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7719.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis