Browse Element(s) Details


OsAffx.31222.1.S1_at

Description gb:NM_197009.1
DB_XREF= gi:37535377
TID=OsAffx.31222.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0026O12.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3375011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g426709/11transposon protein, putative, unclassified
LOC_Os12g277704/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33730Os.46535.1.S1_at11/1110+17469819..17473833PPR986-12, putative, expressed
LOC_Os10g33730Os.46535.2.S1_x_at10/1110+17469819..17473833PPR986-12, putative, expressed
LOC_Os10g33730Os.46535.2.S1_at9/1110+17469819..17473833PPR986-12, putative, expressed
LOC_Os10g33740OsAffx.92.1.S1_at11/1110+17491072..17495708transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33740Os.47407.1.A1_at1/1110+17491072..17495708transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33750OsAffx.31222.1.S1_at11/1110+17498005..17500496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33750OsAffx.31222.2.S1_at3/1110+17498005..17500496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33750OsAffx.31222.2.S1_x_at2/1110+17498005..17500496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33760Os.39129.1.S1_at11/1110+17519698..17521964NAC-domain containing protein 21/22, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31222.1.S1_at--820--8531Chr10:17498925..17498949 (25 bp)
TGGACGATTCAGATGTAACACGCAT
LOC_Os10g33750
OsAffx.31222.1.S1_at--968--9811Chr10:17498910..17498934 (25 bp)
TAACACGCATGTAACTGGGAAGCTT
LOC_Os10g33750
OsAffx.31222.1.S1_at--281--3512Chr03:23724581..23724678 (25 bp)
CATGTAACTGGGAAGCTTGAGGCCT
LOC_Os03g42670
OsAffx.31222.1.S1_at--1029--6213Chr12:16369861..16369885 (25 bp)
GAGGCCTATAATGAAGCTTATGTTC
LOC_Os12g27770
OsAffx.31222.1.S1_at--774--4893Chr12:16369876..16369900 (25 bp)
GCTTATGTTCAGCTGCATGGAGCAG
LOC_Os12g27770
OsAffx.31222.1.S1_at--396--5534Chr12:16369962..16369986 (25 bp)
GAAACATGGTCGATTCATGATCGGT
LOC_Os12g27770
OsAffx.31222.1.S1_at--1108--113Chr12:16369974..16370366 (25 bp)
ATTCATGATCGGTGATGGGCTCATT
LOC_Os12g27770
OsAffx.31222.1.S1_at--857--8612Chr03:23724827..23724851 (25 bp)
TGGTGACAGTTCACTTGATGATCCA
LOC_Os03g42670
OsAffx.31222.1.S1_at--97--8872Chr03:23724842..23724917 (25 bp)
TGATGATCCACACCTTGAGCGGCAA
LOC_Os03g42670
OsAffx.31222.1.S1_at--906--6672Chr03:23725128..23725432 (25 bp)
GTTGCTTTAAGAGCTTTGTCCGTAT
LOC_Os03g42670
OsAffx.31222.1.S1_at--872--9772Chr03:23725420..23725439 (20 bp)
TAAGAGCTTTGTCCGTATCTTCGGC
LOC_Os03g42670
Target Sequence 
TGGACGATTCAGATGTAACACGCATGTAACTGGGAAGCTTGAGGCCTATAATGAAGCTTATGTTCAGCTGCATGGAGCAG
GAAGTGATTGGCGCAATTCTCCCATTGATCCAATGGCTGTGCACATGGCTGGTGGTGGAAAGAAACATGGTCGATTCATG
ATCGGTGATGGGCTCATTGACTCATCAGCAATCTTTGGTGACAGTTCACTTGATGATCCACACCTTGAGCGGCAACTACA
AGAGGAGCGCGAGGCAAGGGAACGAGAGCGTGAAGAAAGGGAGCGTGAGAAGGAGAGGGAGCGGCAGGAGCGGGAGCAGG
AGAAGGAGCGTGAGTGTGAAGAGAGGGCACGGGAGAAGGAGCAGGATAGAAAGGAGAGGGAGCTGGAGCGCAAGGAAAGG
GAGTTGGAAAAGATAGCGTTTGAACAGAAATCATCGTTCTTTGAAGTTGCTTTAAGAGCTTTGTCCGTATCTTCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis