Browse Element(s) Details


Os.46535.2.S1_x_at

Description gb:BE229417
DB_XREF= gi:8955611
DB_XREF=98MJ0097
CLONE=98MJ0097
TID=Os.46535.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46535 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0026O12.3), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3373010/11PPR986-12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33700Os.24026.1.S1_at8/1110+17443861..17447530pentatricopeptide, putative, expressed
LOC_Os10g33700Os.24026.2.S1_x_at8/1110+17443861..17447530pentatricopeptide, putative, expressed
LOC_Os10g33710Os.15594.1.S1_at11/1110+17449112..17463951expressed protein
LOC_Os10g33710Os.15594.1.S1_s_at11/1110+17449112..17463951expressed protein
LOC_Os10g33720Os.21896.1.S1_at11/1110+17464943..17470306dehydration-responsive protein, putative, expressed
LOC_Os10g33730Os.46535.1.S1_at11/1110+17469819..17473833PPR986-12, putative, expressed
LOC_Os10g33730Os.46535.2.S1_x_at10/1110+17469819..17473833PPR986-12, putative, expressed
LOC_Os10g33730Os.46535.2.S1_at9/1110+17469819..17473833PPR986-12, putative, expressed
LOC_Os10g33740OsAffx.92.1.S1_at11/1110+17491072..17495708transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33740Os.47407.1.A1_at1/1110+17491072..17495708transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33750OsAffx.31222.1.S1_at11/1110+17498005..17500496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33750OsAffx.31222.2.S1_at3/1110+17498005..17500496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33750OsAffx.31222.2.S1_x_at2/1110+17498005..17500496transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46535.2.S1_x_at--883--9751Chr10:17471114..17471138 (25 bp)
TAAGTTCTTTCCCATAACCTTCTTG
LOC_Os10g33730
Os.46535.2.S1_x_at--846--3591Chr10:17471093..17471117 (25 bp)
CTTGAAGCACTCCATGATCTCTTAT
LOC_Os10g33730
Os.46535.2.S1_x_at--522--8851Chr10:17471060..17471084 (25 bp)
TGATCGATGTGCTTCATGGGAAACT
LOC_Os10g33730
Os.46535.2.S1_x_at--927--8071Chr10:17471034..17471058 (25 bp)
GGAGCTCTGAGTTCTTGCAAAGATC
LOC_Os10g33730
Os.46535.2.S1_x_at--1158--1451Chr10:17471003..17471027 (25 bp)
AGAAGGTGCACCTCTGGTCAGAATT
LOC_Os10g33730
Os.46535.2.S1_x_at--327--1551Chr10:17470947..17470971 (25 bp)
AGCTTGTGCTGACGCCATTTCAAGA
LOC_Os10g33730
Os.46535.2.S1_x_at--439--6911NONE
GTATGATTACAGGAGCGGTTTCGAC
NONE
Os.46535.2.S1_x_at--83--4691Chr10:17470090..17470114 (25 bp)
GCGGTTTCGACATTGAATCGTATCT
LOC_Os10g33730
Os.46535.2.S1_x_at--555--9391Chr10:17470073..17470097 (25 bp)
TCGTATCTGAGGGAGCAGCCGAGCC
LOC_Os10g33730
Os.46535.2.S1_x_at--380--5871Chr10:17470053..17470077 (25 bp)
GAGCCTCGCTTCTTGGCTTCTGAGC
LOC_Os10g33730
Os.46535.2.S1_x_at--153--4771Chr10:17470030..17470054 (25 bp)
GCTGCAGATGCTCACAGTGCGAAAG
LOC_Os10g33730
Target Sequence 
TAAGTTCTTTCCCATAACCTTCTTGAAGCACTCCATGATCTCTTATATATACCATGATCGATGTGCTTCATGGGAAACTG
GGAGCTCTGAGTTCTTGCAAAGATCAGATGGAGAAGGTGCACCTCTGGTCAGAATTAATCGGAAGAAAAGGTTGGTCTGG
ATGTGGCAGCTTGTGCTGACGCCATTTCAAGAAAAGTGATATGAATTATGCACATATNCCTATAAAACATGCGCATGNGA
TTATANCGNNGATATGGNGAGANCAGTAATGCTCTTCAGCTAATGATTTNCAGGCAGCTGGNAACCCCGGGTATGATTAC
AGGAGCGGTTTCGACATTGAATCGTATCTGAGGGAGCAGCCGAGCCTCGCTTCTTGGCTTCTGAGCTGCAGATGCTCACA
GTGCGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46535.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis