Browse Element(s) Details


Os.24026.1.S1_at

Description gb:AK103437.1
DB_XREF= gi:32988646
TID=Os.24026.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24026 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0026O12.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033129C05, full insert sequence.
FL= gb:AK103437.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g337008/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33660Os.3033.1.S1_at11/1110+17417242..17420674SNF7 family protein, expressed
LOC_Os10g33670Os.46795.1.S1_at10/1110+17422249..17423926expressed protein
LOC_Os10g33680Os.12404.1.S1_a_at11/1110+17426430..17434258EF hand family protein, expressed
LOC_Os10g33690Os.46310.1.S1_at10/1110+17437474..17442624GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g33690OsAffx.17544.1.S1_at1/1110+17437474..17442624GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g33700Os.24026.1.S1_at8/1110+17443861..17447530pentatricopeptide, putative, expressed
LOC_Os10g33700Os.24026.2.S1_x_at8/1110+17443861..17447530pentatricopeptide, putative, expressed
LOC_Os10g33710Os.15594.1.S1_at11/1110+17449112..17463951expressed protein
LOC_Os10g33710Os.15594.1.S1_s_at11/1110+17449112..17463951expressed protein
LOC_Os10g33720Os.21896.1.S1_at11/1110+17464943..17470306dehydration-responsive protein, putative, expressed
LOC_Os10g33730Os.46535.1.S1_at11/1110+17469819..17473833PPR986-12, putative, expressed
LOC_Os10g33730Os.46535.2.S1_x_at10/1110+17469819..17473833PPR986-12, putative, expressed
LOC_Os10g33730Os.46535.2.S1_at9/1110+17469819..17473833PPR986-12, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24026.1.S1_at--107--6211Chr10:17444031..17444055 (25 bp)
GAGGCATTGTGGATGTCACTTCGCA
LOC_Os10g33700
Os.24026.1.S1_at--969--7511NONE
GTGGATGTCACTTCGCATGGCATGA
NONE
Os.24026.1.S1_at--1049--4991NONE
GCATGGCATGATGGCCCTTGTAACC
NONE
Os.24026.1.S1_at--841--1851Chr10:17443979..17444003 (25 bp)
ACGACATCGTCGTTAAGCAGGATAG
LOC_Os10g33700
Os.24026.1.S1_at--694--8551Chr10:17443942..17443966 (25 bp)
TGGATTAGCGGTAGAGTTCCCCTAA
LOC_Os10g33700
Os.24026.1.S1_at--558--7831Chr10:17443933..17443957 (25 bp)
GGTAGAGTTCCCCTAATGTGTTTAG
LOC_Os10g33700
Os.24026.1.S1_at--325--2971Chr10:17443919..17443943 (25 bp)
AATGTGTTTAGGTGCAGCTTGATTC
LOC_Os10g33700
Os.24026.1.S1_at--1099--1031Chr10:17443910..17443934 (25 bp)
AGGTGCAGCTTGATTCTTGAATTCG
LOC_Os10g33700
Os.24026.1.S1_at--1112--111Chr10:17443898..17443922 (25 bp)
ATTCTTGAATTCGTAATCTCTCTAT
LOC_Os10g33700
Os.24026.1.S1_at--605--5191Chr10:17443892..17443916 (25 bp)
GAATTCGTAATCTCTCTATTTATTT
LOC_Os10g33700
Os.24026.1.S1_at--320--2871NONE
AAGTGTTTATATGGCACGGTTGAAA
NONE
Target Sequence 
GAGGCATTGTGGATGTCACTTCGCATGGCATGATGGCCCTTGTAACCNCATTACGACATCGTCGTTAAGCAGGATAGATT
AGCATATTNTGGATTAGCGGTAGAGTTCCCCTAATGTGTTTAGGTGCAGCTTGATTCTTGAATTCGTAATCTCTCTATTT
ATTTATTTATATATATAAGNGNNGCTGTTGGTTGCNTGTGTTTGAATTGAATGATGATGATTAAGTGTTTATATGGCACG
GTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis