Browse Element(s) Details


Os.46310.1.S1_at

Description gb:AK070445.1
DB_XREF= gi:32980469
TID=Os.46310.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.46310 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative esterase (OSJNBa0026O12.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052C15, full insert sequence.
FL= gb:AK070445.1 gb:AK060164.1 gb:AK121743.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3369010/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33650Os.46666.2.S1_x_at11/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33650Os.46666.1.S1_at11/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33650Os.52991.1.A1_at8/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33660Os.3033.1.S1_at11/1110+17417242..17420674SNF7 family protein, expressed
LOC_Os10g33670Os.46795.1.S1_at10/1110+17422249..17423926expressed protein
LOC_Os10g33680Os.12404.1.S1_a_at11/1110+17426430..17434258EF hand family protein, expressed
LOC_Os10g33690Os.46310.1.S1_at10/1110+17437474..17442624GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g33690OsAffx.17544.1.S1_at1/1110+17437474..17442624GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g33700Os.24026.1.S1_at8/1110+17443861..17447530pentatricopeptide, putative, expressed
LOC_Os10g33700Os.24026.2.S1_x_at8/1110+17443861..17447530pentatricopeptide, putative, expressed
LOC_Os10g33710Os.15594.1.S1_at11/1110+17449112..17463951expressed protein
LOC_Os10g33710Os.15594.1.S1_s_at11/1110+17449112..17463951expressed protein
LOC_Os10g33720Os.21896.1.S1_at11/1110+17464943..17470306dehydration-responsive protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46310.1.S1_at--1033--5971Chr10:17440734..17440758 (25 bp)
GAGACCGCAGGATGGCAGAAACTTT
LOC_Os10g33690
Os.46310.1.S1_at--266--9891NONE
TACTTGAGCGATGGACTGCACCTGA
NONE
Os.46310.1.S1_at--274--5731Chr10:17442196..17442220 (25 bp)
GACTGCACCTGACGCCAGAAGGAAA
LOC_Os10g33690
Os.46310.1.S1_at--374--5591Chr10:17442279..17442303 (25 bp)
GAAATGCCATATGATTTCCCTCACC
LOC_Os10g33690
Os.46310.1.S1_at--703--10651Chr10:17442294..17442318 (25 bp)
TTCCCTCACCATTCCAGAATTGATG
LOC_Os10g33690
Os.46310.1.S1_at--282--6691Chr10:17442322..17442346 (25 bp)
GTTGCCCAGAAAAAGCCTTCCAGTG
LOC_Os10g33690
Os.46310.1.S1_at--54--3111Chr10:17442362..17442386 (25 bp)
AATAGCTTGTGGTGCGGTTCATCTG
LOC_Os10g33690
Os.46310.1.S1_at--286--9471Chr10:17442383..17442407 (25 bp)
TCTGGAGATCTCTTTTCCTCTTTGA
LOC_Os10g33690
Os.46310.1.S1_at--1019--2971Chr10:17442434..17442458 (25 bp)
AATGTTTTACTGCTTCTATCATGAG
LOC_Os10g33690
Os.46310.1.S1_at--209--5191Chr10:17442472..17442496 (25 bp)
GAATTTAGCACCCATTTTTACTCTG
LOC_Os10g33690
Os.46310.1.S1_at--331--1251Chr10:17442545..17442569 (25 bp)
AGATAGTAGTCCGTGGCCTGTAACC
LOC_Os10g33690
Target Sequence 
GAGACCGCAGGATGGCAGAAACTTTACTTGAGCGATGGACTGCACCTGACGCCAGAAGGAAATGCTGTTGTCCACAAGGA
AGTTGTCCAAACGTTGAGAAGTGTGGGTCTGAAAGCAGAAGAAATGCCATATGATTTCCCTCACCATTCCAGAATTGATG
GTAGTTGCCCAGAAAAAGCCTTCCAGTGAAGTGTGATGCCTTGAATAGCTTGTGGTGCGGTTCATCTGGAGATCTCTTTT
CCTCTTTGAATTAGGAGAAAGATCAAATTAAAGACAATGTTTTACTGCTTCTATCATGAGCTTTTGGAGTGAGGAATTTA
GCACCCATTTTTACTCTGGAAGAAATAAAGTTCTCTTCTTGAAACTGAGAAATTGATAGTGGTAGGAGATAGTAGTCCGT
GGCCTGTAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46310.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis