Browse Element(s) Details


Os.12404.1.S1_a_at

Description gb:AK067811.1
DB_XREF= gi:32977829
TID=Os.12404.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein phosphatase 2A regulatory subunit (OSJNBa0026O12.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116N14, full insert sequence.
FL= gb:AK101394.1 gb:AK067811.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3368011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33634NANA10+17402021..17402128NA
LOC_Os10g33640OsAffx.30659.1.S1_at11/1110+17403206..17406409Protein kinase domain containing protein, expressed
LOC_Os10g33650Os.46666.2.S1_x_at11/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33650Os.46666.1.S1_at11/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33650Os.52991.1.A1_at8/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33660Os.3033.1.S1_at11/1110+17417242..17420674SNF7 family protein, expressed
LOC_Os10g33670Os.46795.1.S1_at10/1110+17422249..17423926expressed protein
LOC_Os10g33680Os.12404.1.S1_a_at11/1110+17426430..17434258EF hand family protein, expressed
LOC_Os10g33690Os.46310.1.S1_at10/1110+17437474..17442624GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g33690OsAffx.17544.1.S1_at1/1110+17437474..17442624GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g33700Os.24026.1.S1_at8/1110+17443861..17447530pentatricopeptide, putative, expressed
LOC_Os10g33700Os.24026.2.S1_x_at8/1110+17443861..17447530pentatricopeptide, putative, expressed
LOC_Os10g33710Os.15594.1.S1_at11/1110+17449112..17463951expressed protein
LOC_Os10g33710Os.15594.1.S1_s_at11/1110+17449112..17463951expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12404.1.S1_a_at--87--2831Chr10:17433670..17433694 (25 bp)
AAGTTGTTCGCTAGCCTGTGGAGAC
LOC_Os10g33680
Os.12404.1.S1_a_at--697--10051Chr10:17433767..17433791 (25 bp)
TAGTATCGGTTGTCCAGTTGTGCAA
LOC_Os10g33680
Os.12404.1.S1_a_at--900--8871Chr10:17433825..17433849 (25 bp)
TGATGTGGGCGTCCTGCCTTGTCAA
LOC_Os10g33680
Os.12404.1.S1_a_at--862--8231Chr10:17433850..17433874 (25 bp)
GGCAACAACCTCAACAGTCTCAAGT
LOC_Os10g33680
Os.12404.1.S1_a_at--102--6851Chr10:17433909..17433933 (25 bp)
GTTTCTGTGTTCTTATTGGTGCTTT
LOC_Os10g33680
Os.12404.1.S1_a_at--817--7191Chr10:17433944..17433968 (25 bp)
GTCGGTTTATTCAATTGCTGTGCTC
LOC_Os10g33680
Os.12404.1.S1_a_at--392--5471Chr10:17433982..17434006 (25 bp)
GAACTGTTATTGTTTGGCTGCCATT
LOC_Os10g33680
Os.12404.1.S1_a_at--425--4611Chr10:17434029..17434053 (25 bp)
GCGAGCAAGCAATTCCATCATTAAC
LOC_Os10g33680
Os.12404.1.S1_a_at--101--831Chr10:17434061..17434085 (25 bp)
ATGGTATGTAGCTTTCTGGTTCTGC
LOC_Os10g33680
Os.12404.1.S1_a_at--1151--7731Chr10:17434100..17434124 (25 bp)
GGTGTTTTGTAGCTGTTGCCGTCAC
LOC_Os10g33680
Os.12404.1.S1_a_at--29--6691Chr10:17434114..17434138 (25 bp)
GTTGCCGTCACTGGGTACATTTTGG
LOC_Os10g33680
Target Sequence 
AAGTTGTTCGCTAGCCTGTGGAGACCATTGCAGGCTTGAGGAAGTTTCAGTAACACCAAAGACTTCTTACAGGATTTACT
GTGCAGGTCTGATTCGATAGTATCGGTTGTCCAGTTGTGCAAAACATTTTTGCTTGGCAGGAGAAACGAGGAAGTTGATG
TGGGCGTCCTGCCTTGTCAAGGCAACAACCTCAACAGTCTCAAGTGATGCTATAGTGGGGGACCTTTCATGGTCAACATG
TTTCTGTGTTCTTATTGGTGCTTTAGGGGGGGATGTCGGTTTATTCAATTGCTGTGCTCAAATTTTGGAGCTGAACTGTT
ATTGTTTGGCTGCCATTTTCTTTGTTATTTTGTGGAAGTGCGAGCAAGCAATTCCATCATTAACTTTGATCATGGTATGT
AGCTTTCTGGTTCTGCTTTCTGTTCAGTATGGTGTTTTGTAGCTGTTGCCGTCACTGGGTACATTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12404.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis