Browse Element(s) Details


Os.52991.1.A1_at

Description gb:AK070314.1
DB_XREF= gi:32980338
TID=Os.52991.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.52991 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023051B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023051B05, full insert sequence.
FL= gb:AK070314.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g336508/11Casein kinase I, epsilon isoform, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33600OsAffx.18505.1.S1_at11/1110+17386921..17387154hypothetical protein
LOC_Os10g33610OsAffx.9656.1.S1_x_at3/1110+17390836..17391330hypothetical protein
LOC_Os10g33610OsAffx.9656.3.S1_x_at2/1110+17390836..17391330hypothetical protein
LOC_Os10g33620Os.3046.1.S1_at11/1110+17393077..17395609Ubiquitin family protein, expressed
LOC_Os10g33630Os.3042.1.S1_at10/1110+17397043..17400163Adaptin ear-binding coat-associated protein 2, putative, expressed
LOC_Os10g33634NANA10+17402021..17402128NA
LOC_Os10g33640OsAffx.30659.1.S1_at11/1110+17403206..17406409Protein kinase domain containing protein, expressed
LOC_Os10g33650Os.46666.2.S1_x_at11/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33650Os.46666.1.S1_at11/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33650Os.52991.1.A1_at8/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33660Os.3033.1.S1_at11/1110+17417242..17420674SNF7 family protein, expressed
LOC_Os10g33670Os.46795.1.S1_at10/1110+17422249..17423926expressed protein
LOC_Os10g33680Os.12404.1.S1_a_at11/1110+17426430..17434258EF hand family protein, expressed
LOC_Os10g33690Os.46310.1.S1_at10/1110+17437474..17442624GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g33690OsAffx.17544.1.S1_at1/1110+17437474..17442624GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016310biological_processphosphorylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009506cellular_componentplasmodesma
GO:0004681molecular_functioncasein kinase I activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52991.1.A1_at--547--3091Chr10:17411058..17411082 (25 bp)
AATAGTAAGTTCACCAGGCTCTAAC
LOC_Os10g33650
Os.52991.1.A1_at--213--10371Chr10:17411173..17411197 (25 bp)
TTTTTTCTCTCCAAATCCTGTCTGG
LOC_Os10g33650
Os.52991.1.A1_at--420--2271Chr10:17411185..17411209 (25 bp)
AAATCCTGTCTGGAACTTGTTCGCA
LOC_Os10g33650
Os.52991.1.A1_at--806--2511Chr10:17411198..17411222 (25 bp)
AACTTGTTCGCATATTCTTACCCAT
LOC_Os10g33650
Os.52991.1.A1_at--426--171Chr10:17411209..17411233 (25 bp)
ATATTCTTACCCATAACCCATGCAA
LOC_Os10g33650
Os.52991.1.A1_at--605--8051Chr10:17411294..17411318 (25 bp)
GGAGATCGTGATCCTGAACATGATT
LOC_Os10g33650
Os.52991.1.A1_at--339--411Chr10:17411425..17411449 (25 bp)
ATCAGGCATCCATTTGTCAGGTTTA
LOC_Os10g33650
Os.52991.1.A1_at--575--4891NONE
GCTTTTATGTTTGCCAGGTGTGCGT
NONE
Os.52991.1.A1_at--1128--1031NONE
AGGTGTGCGTTGTTGACCCTTTTCT
NONE
Os.52991.1.A1_at--829--4591Chr10:17411602..17411626 (25 bp)
GCGAACCAGGTTTGCATTATAGAGA
LOC_Os10g33650
Os.52991.1.A1_at--167--5971NONE
GAGAAGTTTTTGTCCAGTTACCATC
NONE
Target Sequence 
AATAGTAAGTTCACCAGGCTCTAACTNNGAATGNATACAAGATGNTGCAGTNCTGGGTGCTCCTAGAGTNAGTTAGGAAG
AAAANCCACCTATGGAGTTTGATCACAACTTTCTTTTTTTTCTCTCCAAATCCTGTCTGGAACTTGTTCGCATATTCTTA
CCCATAACCCATGCAACAAAAATGTTCGAGATAATGATCATGCANAATACACAAACTCCACCAAAGGCTAANGTGAGGAG
ATCGTGATCCTGAACATGATTAGGANGATTATCTAATTCTCTTCAGAAAAATGCNAAGTTAAGTCAGGCCTTTAAGAACA
AGGGAGGACATTNAAATATGTGAAGCGAGAAAATTATTGATAAGCTTATCAGGCATCCATTTGTCAGGTTTAGATTCTTT
TCAAATATCTGGCTTTTATGTTTGCCAGGTGTGCGTTGTTGACCCTTTTCTTTTTAGATAAACCGAGTGGAATACATGCA
TTCCAAGGGATTTATTCACCGTGATATCAAGCCAGACAATTTCCTTATCGGCTTAGGCCGGAAAGCGAACCAGGTTTGCA
TTATAGAGAAGTTTTTGTCCAGTTACCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52991.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis