Browse Element(s) Details


Os.3046.1.S1_at

Description gb:AK101853.1
DB_XREF= gi:32987062
TID=Os.3046.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.3046 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative polyubiquitin (OSJNBb0044B19.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033069L14, full insert sequence.
FL= gb:AK101853.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3362011/11Ubiquitin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33560NANA10+17365848..17369399retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g33570NANA10+17371838..17376033retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g33600OsAffx.18505.1.S1_at11/1110+17386921..17387154hypothetical protein
LOC_Os10g33610OsAffx.9656.1.S1_x_at3/1110+17390836..17391330hypothetical protein
LOC_Os10g33610OsAffx.9656.3.S1_x_at2/1110+17390836..17391330hypothetical protein
LOC_Os10g33620Os.3046.1.S1_at11/1110+17393077..17395609Ubiquitin family protein, expressed
LOC_Os10g33630Os.3042.1.S1_at10/1110+17397043..17400163Adaptin ear-binding coat-associated protein 2, putative, expressed
LOC_Os10g33634NANA10+17402021..17402128NA
LOC_Os10g33640OsAffx.30659.1.S1_at11/1110+17403206..17406409Protein kinase domain containing protein, expressed
LOC_Os10g33650Os.46666.2.S1_x_at11/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33650Os.46666.1.S1_at11/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33650Os.52991.1.A1_at8/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33660Os.3033.1.S1_at11/1110+17417242..17420674SNF7 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007568biological_processaging
GO:0005622cellular_componentintracellular
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3046.1.S1_at--593--8391Chr10:17395021..17395045 (25 bp)
GGCGCTCACAGATGGTCGGATGCTA
LOC_Os10g33620
Os.3046.1.S1_at--633--6751Chr10:17395094..17395118 (25 bp)
GTTCAGTTCTTCGTCAAGTCATGGG
LOC_Os10g33620
Os.3046.1.S1_at--556--5571Chr10:17395205..17395229 (25 bp)
GAAAGTCTGTACTATCTCTGTCACA
LOC_Os10g33620
Os.3046.1.S1_at--789--9471Chr10:17395221..17395245 (25 bp)
TCTGTCACAAGGGACGTGTTCTGTT
LOC_Os10g33620
Os.3046.1.S1_at--523--1971Chr10:17395247..17395271 (25 bp)
ACTGAGGATACTCTTCTGGATCATG
LOC_Os10g33620
Os.3046.1.S1_at--1046--6071Chr10:17395279..17395303 (25 bp)
GAGTAACTCCACAGTTTACATCCGC
LOC_Os10g33620
Os.3046.1.S1_at--741--1651Chr10:17395341..17395365 (25 bp)
AGCGCTAGGTAGCTACTTCTATGAA
LOC_Os10g33620
Os.3046.1.S1_at--281--6671Chr10:17395400..17395424 (25 bp)
GTTGCTTAGACGTTAGACCCTCGTA
LOC_Os10g33620
Os.3046.1.S1_at--106--7751Chr10:17395437..17395461 (25 bp)
GGTGTTACTAATCCTAGTTCTCTAG
LOC_Os10g33620
Os.3046.1.S1_at--86--6711Chr10:17395482..17395506 (25 bp)
GTTCCTGACTTGTGATGCCTATCTA
LOC_Os10g33620
Os.3046.1.S1_at--78--5471Chr10:17395563..17395587 (25 bp)
GAACTGTGCATATTTCCATCTTGAT
LOC_Os10g33620
Target Sequence 
GGCGCTCACAGATGGTCGGATGCTACAGGATCAGCATGTCAAAAACAATGATACTCTCTTGCTGCAGCAGAATGTTCAGT
TCTTCGTCAAGTCATGGGAGGGTAAGACCTTAACTATGGTTTTGAAAACGTCCGACACGGGTAAGCAAATCAAGGATAGA
ATTGCAGAGAAGTTGCGGATCAAAGAAAGTCTGTACTATCTCTGTCACAAGGGACGTGTTCTGTTAACTGAGGATACTCT
TCTGGATCATGAGGTCGAGAGTAACTCCACAGTTTACATCCGCCTTCGGAATTCAGCGGTGGTGAAACCAAATGCAAAGA
AGCGCTAGGTAGCTACTTCTATGAACTATCAACTTCCTTAAGGCAAGAGACAAAACATAGTTGCTTAGACGTTAGACCCT
CGTATGGTTAGTTTTTGGTGTTACTAATCCTAGTTCTCTAGCAGTGAACTGGAGGTTTCAGGTTCCTGACTTGTGATGCC
TATCTATTAGTAATACTTTTGCTGTAAAAACTTTTGCTTGAACTGAAGGGGAGACACAGAAAGAACTGTGCATATTTCCA
TCTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis