Browse Element(s) Details


Os.3042.1.S1_at

Description gb:AK065629.1
DB_XREF= gi:32975647
TID=Os.3042.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3042 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0044B19.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013028C23, full insert sequence.
FL= gb:AK065629.1 gb:AK100161.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3363010/11Adaptin ear-binding coat-associated protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33570NANA10+17371838..17376033retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g33600OsAffx.18505.1.S1_at11/1110+17386921..17387154hypothetical protein
LOC_Os10g33610OsAffx.9656.1.S1_x_at3/1110+17390836..17391330hypothetical protein
LOC_Os10g33610OsAffx.9656.3.S1_x_at2/1110+17390836..17391330hypothetical protein
LOC_Os10g33620Os.3046.1.S1_at11/1110+17393077..17395609Ubiquitin family protein, expressed
LOC_Os10g33630Os.3042.1.S1_at10/1110+17397043..17400163Adaptin ear-binding coat-associated protein 2, putative, expressed
LOC_Os10g33634NANA10+17402021..17402128NA
LOC_Os10g33640OsAffx.30659.1.S1_at11/1110+17403206..17406409Protein kinase domain containing protein, expressed
LOC_Os10g33650Os.46666.2.S1_x_at11/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33650Os.46666.1.S1_at11/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33650Os.52991.1.A1_at8/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33660Os.3033.1.S1_at11/1110+17417242..17420674SNF7 family protein, expressed
LOC_Os10g33670Os.46795.1.S1_at10/1110+17422249..17423926expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006858biological_processextracellular transport
GO:0005215molecular_functiontransporter activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3042.1.S1_at--674--3091Chr10:17399163..17399187 (25 bp)
AATAGCGACGCCTTTTCAGATCTTT
LOC_Os10g33630
Os.3042.1.S1_at--396--8991NONE
TGAAGCAAAACCTACCGTCATCGAC
NONE
Os.3042.1.S1_at--203--9491Chr10:17399729..17399753 (25 bp)
TCTGCTGTTGATAACCTTTTCTCAG
LOC_Os10g33630
Os.3042.1.S1_at--211--3051Chr10:17399791..17399815 (25 bp)
AATCCCTTGGAGGAAGCCTGTATCC
LOC_Os10g33630
Os.3042.1.S1_at--51--6911Chr10:17399810..17399834 (25 bp)
GTATCCGCTCGAATCACATGGTGAT
LOC_Os10g33630
Os.3042.1.S1_at--22--691Chr10:17399836..17399860 (25 bp)
ATGACTTGCTAGCATCCACTTGGTA
LOC_Os10g33630
Os.3042.1.S1_at--1089--6351Chr10:17399908..17399932 (25 bp)
GATGCCACATGGATTCCTGGAGCTT
LOC_Os10g33630
Os.3042.1.S1_at--525--8891Chr10:17399950..17399974 (25 bp)
TGAGTATGGCTTTCCTTGTTTGTCA
LOC_Os10g33630
Os.3042.1.S1_at--441--5251Chr10:17400010..17400034 (25 bp)
GAATCATACTGACCTCATTGTGTTG
LOC_Os10g33630
Os.3042.1.S1_at--187--5271Chr10:17400064..17400088 (25 bp)
GAATGCGGCAGCTTATGTCACTGAT
LOC_Os10g33630
Os.3042.1.S1_at--535--1871Chr10:17400108..17400132 (25 bp)
ACGAGCACTGCATTCTTGTCTTTGT
LOC_Os10g33630
Target Sequence 
AATAGCGACGCCTTTTCAGATCTTTCTGCTATGAAGCAAAACCTACCGTCATCGACAGAGTCGGCGCAAACAAAAAGCAC
AGGTGCTGGTTGGGCAGCATTTTGACAATGAGTCTGCCATCTGCTGTTGATAACCTTTTCTCAGGAAAAGGAAAAGAAAA
TTGTGTAACTGAAAAAAAAGAAATCCCTTGGAGGAAGCCTGTATCCGCTCGAATCACATGGTGATAATGACTTGCTAGCA
TCCACTTGGTACTCGAAAAAATAAAAGATTTACAGGATGATGTTGTTATTCATCGTGCGATGCCACATGGATTCCTGGAG
CTTTGGAAGTCTGAAAAATATGAGTATGGCTTTCCTTGTTTGTCATATTTGTGTTGTCAGATTTTTCGCATATGAAACAA
GAATCATACTGACCTCATTGTGTTGTACCCTTAAAGATTTGAGAACACTGTTATGAATGCGGCAGCTTATGTCACTGATG
CCAAATTTTCTGTAAAACACGAGCACTGCATTCTTGTCTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis