Browse Element(s) Details


Os.3033.1.S1_at

Description gb:AK072826.1
DB_XREF= gi:32982849
TID=Os.3033.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.3033 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0026O12.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023136L17, full insert sequence.
FL= gb:AK072826.1 gb:AK104071.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3366011/11SNF7 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33620Os.3046.1.S1_at11/1110+17393077..17395609Ubiquitin family protein, expressed
LOC_Os10g33630Os.3042.1.S1_at10/1110+17397043..17400163Adaptin ear-binding coat-associated protein 2, putative, expressed
LOC_Os10g33634NANA10+17402021..17402128NA
LOC_Os10g33640OsAffx.30659.1.S1_at11/1110+17403206..17406409Protein kinase domain containing protein, expressed
LOC_Os10g33650Os.46666.2.S1_x_at11/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33650Os.46666.1.S1_at11/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33650Os.52991.1.A1_at8/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33660Os.3033.1.S1_at11/1110+17417242..17420674SNF7 family protein, expressed
LOC_Os10g33670Os.46795.1.S1_at10/1110+17422249..17423926expressed protein
LOC_Os10g33680Os.12404.1.S1_a_at11/1110+17426430..17434258EF hand family protein, expressed
LOC_Os10g33690Os.46310.1.S1_at10/1110+17437474..17442624GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g33690OsAffx.17544.1.S1_at1/1110+17437474..17442624GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g33700Os.24026.1.S1_at8/1110+17443861..17447530pentatricopeptide, putative, expressed
LOC_Os10g33700Os.24026.2.S1_x_at8/1110+17443861..17447530pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3033.1.S1_at--558--7591Chr10:17419129..17419151 (23 bp)
GGGCATTGCAACACATACACAGGCA
LOC_Os10g33660
Os.3033.1.S1_at--555--2051Chr10:17419001..17419025 (25 bp)
ACTTCAGTGGCTGCTGGCATGCAAA
LOC_Os10g33660
Os.3033.1.S1_at--511--2971Chr10:17418680..17418704 (25 bp)
AATGGATCCAGCCAAACAGATGAAG
LOC_Os10g33660
Os.3033.1.S1_at--972--6291Chr10:17418487..17418511 (25 bp)
GATGATGTCTGACTCCATTGACAAT
LOC_Os10g33660
Os.3033.1.S1_at--878--6511Chr10:17418167..17418281 (25 bp)
GATATTGCCTCACAGTTATCCTCAG
LOC_Os10g33660
Os.3033.1.S1_at--240--6731Chr10:17418153..17418177 (25 bp)
GTTATCCTCAGCTCCTAAAGGAAGG
LOC_Os10g33660
Os.3033.1.S1_at--571--6211Chr10:17417588..17417612 (25 bp)
GAGGCTGGCTGCTCTGAAAAATCCA
LOC_Os10g33660
Os.3033.1.S1_at--582--8171Chr10:17417555..17417579 (25 bp)
GGAACTTCTCTGTAACCCAACATTT
LOC_Os10g33660
Os.3033.1.S1_at--1158--2311Chr10:17417525..17417549 (25 bp)
AAAGACCTGCTCTGTACCTACATTT
LOC_Os10g33660
Os.3033.1.S1_at--990--7011Chr10:17417475..17417499 (25 bp)
GTACATTTGCACCTGTAAATATCGG
LOC_Os10g33660
Os.3033.1.S1_at--64--7431Chr10:17417418..17417442 (25 bp)
GTGTATCAACCTGACAAGCCCGAAA
LOC_Os10g33660
Target Sequence 
GGGCATTGCAACACATACACAGGCAATGCATGCCAACACTTCAGTGGCTGCTGGCATGCAAAGTGCAAGCAAAGCAATGG
GAGCTTTGAACAAGCAAATGGATCCAGCCAAACAGATGAAGGTGATGCAAGAATTCCAAAAACAGTCAGCACAAATGGAT
ATGACGAATGAGATGATGTCTGACTCCATTGACAATATCTTAGACGATGATCAAGCTGAGGAAGAAACTGAAGACCTTGC
AAATCAGGTCCTGGATGAGATTGGTGTTGATATTGCCTCACAGTTATCCTCAGCTCCTAAAGGAAGGATTACTGGAAAGA
AGGTTCAAGCTGATGAAAGTTCAGAATTGGACGAACTCGAGAAGAGGCTGGCTGCTCTGAAAAATCCATAGAAGAGGGAA
CTTCTCTGTAACCCAACATTTTACACAAAGACCTGCTCTGTACCTACATTTCAAATTCGTGATACGAAACAAAATAGTAC
ATTTGCACCTGTAAATATCGGATGGTTGATACTTCAACTATGTGAAGATGGATGTGTATCAACCTGACAAGCCCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis