Browse Element(s) Details


Os.24026.2.S1_x_at

Description gb:CB635266
DB_XREF= gi:29630257
DB_XREF=OSIIEb15H08.f
CLONE=OSIIEb15H08
TID=Os.24026.2
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.24026 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0026O12.4), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g337008/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33660Os.3033.1.S1_at11/1110+17417242..17420674SNF7 family protein, expressed
LOC_Os10g33670Os.46795.1.S1_at10/1110+17422249..17423926expressed protein
LOC_Os10g33680Os.12404.1.S1_a_at11/1110+17426430..17434258EF hand family protein, expressed
LOC_Os10g33690Os.46310.1.S1_at10/1110+17437474..17442624GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g33690OsAffx.17544.1.S1_at1/1110+17437474..17442624GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g33700Os.24026.1.S1_at8/1110+17443861..17447530pentatricopeptide, putative, expressed
LOC_Os10g33700Os.24026.2.S1_x_at8/1110+17443861..17447530pentatricopeptide, putative, expressed
LOC_Os10g33710Os.15594.1.S1_at11/1110+17449112..17463951expressed protein
LOC_Os10g33710Os.15594.1.S1_s_at11/1110+17449112..17463951expressed protein
LOC_Os10g33720Os.21896.1.S1_at11/1110+17464943..17470306dehydration-responsive protein, putative, expressed
LOC_Os10g33730Os.46535.1.S1_at11/1110+17469819..17473833PPR986-12, putative, expressed
LOC_Os10g33730Os.46535.2.S1_x_at10/1110+17469819..17473833PPR986-12, putative, expressed
LOC_Os10g33730Os.46535.2.S1_at9/1110+17469819..17473833PPR986-12, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24026.2.S1_x_at--13--2511Chr10:17447149..17447173 (25 bp)
AACATGGCGCGTTCGGGTGACGTCA
LOC_Os10g33700
Os.24026.2.S1_x_at--915--7051Chr10:17447074..17447098 (25 bp)
GTAAGCGCCTCGATTACGATGCGGT
LOC_Os10g33700
Os.24026.2.S1_x_at--427--9931NONE
TACGATGCGGTCTTCGTGGGTTACA
NONE
Os.24026.2.S1_x_at--54--7351NONE
GTGCACGCCGTGTATCTGGATTATC
NONE
Os.24026.2.S1_x_at--965--7931Chr10:17447018..17447042 (25 bp)
GGATTATCCTACCAGAACCGAGCAG
LOC_Os10g33700
Os.24026.2.S1_x_at--996--5731Chr10:17446953..17446977 (25 bp)
GACGGCCTAGGGATGATTTCTTCAA
LOC_Os10g33700
Os.24026.2.S1_x_at--891--7851Chr10:17446912..17446936 (25 bp)
GGTAGTCTTGTAGTTGTGCAGCCAG
LOC_Os10g33700
Os.24026.2.S1_x_at--1088--5991NONE
GAGACCGACGGCTGCAGGATGATTT
NONE
Os.24026.2.S1_x_at--948--7991Chr10:17446832..17446856 (25 bp)
GGATGTATCACCCATCCATGCTAAG
LOC_Os10g33700
Os.24026.2.S1_x_at--859--831Chr10:17446774..17446798 (25 bp)
ATGGATGTGGCAGGTTTCTCAAAAC
LOC_Os10g33700
Os.24026.2.S1_x_at--1061--2851Chr10:17446741..17446765 (25 bp)
AAGTGCTATGCTGACAACCTTCGCA
LOC_Os10g33700
Target Sequence 
AACATGGCGCGTTCGGGTGACGTCAGCCGCTGCCACCGGTGTGGCCTGTGGTCGAATGGCTCTGCGCCGATCACCGTAAG
CGCCTCGATTACGATGCGGTCTTCGTGGGTTACAGTGCACGCCGTGTATCTGGATTATCCTACCAGAACCGAGCAGAAGA
ATGGGGGTAATTTGGTGGTGATGCGGCCTGACCGACGACGGCCTAGGGATGATTTCTTCAAGGGTGAGGGTGGTGGTGGT
AGTCTTGTAGTTGTGCAGCCAGACCGAGACCGACGGCTGCAGGATGATTTTGGGAGGGCGGCCGCAGATTCTGAGAAGGA
TGTATCACCCATCCATGCTAAGCCGANGAAGCCATTGGACCANAACCCCGAGGGAATGGATGTGGCAGGTTTCTCAAAAC
ATGGAGGAAAGTGCTATGCTGACAACCTTCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24026.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis