Browse Element(s) Details


Os.21896.1.S1_at

Description gb:AK067258.1
DB_XREF= gi:32977276
TID=Os.21896.1
CNT=22
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.21896 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0026O12.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095H15, full insert sequence.
FL= gb:AK067258.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3372011/11dehydration-responsive protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33690Os.46310.1.S1_at10/1110+17437474..17442624GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g33690OsAffx.17544.1.S1_at1/1110+17437474..17442624GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g33700Os.24026.1.S1_at8/1110+17443861..17447530pentatricopeptide, putative, expressed
LOC_Os10g33700Os.24026.2.S1_x_at8/1110+17443861..17447530pentatricopeptide, putative, expressed
LOC_Os10g33710Os.15594.1.S1_at11/1110+17449112..17463951expressed protein
LOC_Os10g33710Os.15594.1.S1_s_at11/1110+17449112..17463951expressed protein
LOC_Os10g33720Os.21896.1.S1_at11/1110+17464943..17470306dehydration-responsive protein, putative, expressed
LOC_Os10g33730Os.46535.1.S1_at11/1110+17469819..17473833PPR986-12, putative, expressed
LOC_Os10g33730Os.46535.2.S1_x_at10/1110+17469819..17473833PPR986-12, putative, expressed
LOC_Os10g33730Os.46535.2.S1_at9/1110+17469819..17473833PPR986-12, putative, expressed
LOC_Os10g33740OsAffx.92.1.S1_at11/1110+17491072..17495708transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33740Os.47407.1.A1_at1/1110+17491072..17495708transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21896.1.S1_at--937--2111Chr10:17469740..17469764 (25 bp)
ACAGTCTTCTCTGACCTTGACAAGA
LOC_Os10g33720
Os.21896.1.S1_at--733--2291Chr10:17469795..17469819 (25 bp)
AAATGGACCGCATCGTTAGGCCTAG
LOC_Os10g33720
Os.21896.1.S1_at--775--8131Chr10:17469844..17469868 (25 bp)
GGACACTGTCATCGAATTCATCAAG
LOC_Os10g33720
Os.21896.1.S1_at--522--6951Chr10:17469908..17469932 (25 bp)
GTAGATGCCGAGTCAAGTCCAGAAT
LOC_Os10g33720
Os.21896.1.S1_at--567--2791Chr10:17470007..17470031 (25 bp)
AAGTAGTCTCTTCTTTTGAGTCCCT
LOC_Os10g33720
Os.21896.1.S1_at--877--10771Chr10:17470022..17470046 (25 bp)
TTGAGTCCCTTTCGCACTGTGAGCA
LOC_Os10g33720
Os.21896.1.S1_at--148--9111Chr10:17470081..17470105 (25 bp)
TGCTCCCTCAGATACGATTCAATGT
LOC_Os10g33720
Os.21896.1.S1_at--1057--6551Chr10:17470096..17470120 (25 bp)
GATTCAATGTCGAAACCGCTCCTGA
LOC_Os10g33720
Os.21896.1.S1_at--1038--1231Chr10:17470124..17470148 (25 bp)
AGATTCCAGTTCGTGATTCCTAGTC
LOC_Os10g33720
Os.21896.1.S1_at--237--91Chr10:17470139..17470163 (25 bp)
ATTCCTAGTCTACCCACGTGAAGAT
LOC_Os10g33720
Os.21896.1.S1_at--790--5291Chr10:17470206..17470230 (25 bp)
GAAGGCCTATTTTTTGTTTCTACAG
LOC_Os10g33720
Target Sequence 
ACAGTCTTCTCTGACCTTGACAAGAGAGGTTGCAGCGCAGAAGATCTCCTGCTTGAAATGGACCGCATCGTTAGGCCTAG
TGGATTTATCATCGTGAGAGACAAGGACACTGTCATCGAATTCATCAAGAAATACCTCNACGCACTTCACTGGGAAGCAG
TAACAACTGTAGATGCCGAGTCAAGTCCAGAATCTGAGGAGAATGAAATGATCTTCATANTCCGGAAGAAATTGTGGCAA
CCAGGAGGCTCACAGGACCCCANACCCCAAGTAGTCTCTTCTTTTGAGTCCCTTTCGCACTGTGAGCATCTGCAGCTCAG
AAGCCAAGAAGCGAGGCTCGGCTGCTCCCTCAGATACGATTCAATGTCGAAACCGCTCCTGAAATAGATTCCAGTTCGTG
ATTCCTAGTCTACCCACGTGAAGATAGATAATTTATCAGCATATGGCAAATGTCTAGCAGGCTAAGCGAAGGCCTATTTT
TTGTTTCTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis