Browse Element(s) Details


Os.39129.1.S1_at

Description gb:AK119558.1
DB_XREF= gi:37989181
TID=Os.39129.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.39129 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NAM (no apical meristem) protein (OSJNBa0026O12.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-106-A07, full insert sequence.
FL= gb:AK119558.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3376011/11NAC-domain containing protein 21/22, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33740OsAffx.92.1.S1_at11/1110+17491072..17495708transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33740Os.47407.1.A1_at1/1110+17491072..17495708transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33750OsAffx.31222.1.S1_at11/1110+17498005..17500496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33750OsAffx.31222.2.S1_at3/1110+17498005..17500496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33750OsAffx.31222.2.S1_x_at2/1110+17498005..17500496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33760Os.39129.1.S1_at11/1110+17519698..17521964NAC-domain containing protein 21/22, putative, expressed
LOC_Os10g33770Os.17003.1.S1_at11/1110+17528819..17543487Importin-beta N-terminal domain containing protein
LOC_Os10g33770Os.17003.1.S2_at11/1110+17528819..17543487Importin-beta N-terminal domain containing protein
LOC_Os10g33770Os.20018.1.S1_a_at1/1110+17528819..17543487Importin-beta N-terminal domain containing protein
LOC_Os10g33774Os.23116.1.A1_s_at1/1110+17544028..17548076NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0010014biological_processmeristem initiation
GO:0010072biological_processprimary shoot apical meristem specification
GO:0010199biological_processorgan boundary specification
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39129.1.S1_at--698--1851Chr10:17521378..17521402 (25 bp)
ACGACAACTCCGGTAGTAGCAGCGC
LOC_Os10g33760
Os.39129.1.S1_at--70--1171Chr10:17521392..17521416 (25 bp)
AGTAGCAGCGCACTGCTTAACCTGA
LOC_Os10g33760
Os.39129.1.S1_at--1143--4891Chr10:17521406..17521430 (25 bp)
GCTTAACCTGACGATGCTGCAATAC
LOC_Os10g33760
Os.39129.1.S1_at--338--6351Chr10:17521418..17521442 (25 bp)
GATGCTGCAATACAGCTTCCTAGAA
LOC_Os10g33760
Os.39129.1.S1_at--984--10651Chr10:17521434..17521458 (25 bp)
TTCCTAGAACATCGGCCAACTGGTG
LOC_Os10g33760
Os.39129.1.S1_at--139--2591Chr10:17521506..17521530 (25 bp)
AACGATGCCACGATGGCACTTGGGA
LOC_Os10g33760
Os.39129.1.S1_at--1135--831Chr10:17521569..17521593 (25 bp)
ATGGAACCAGCATGGCGCCAAGGTG
LOC_Os10g33760
Os.39129.1.S1_at--217--4391Chr10:17521585..17521609 (25 bp)
GCCAAGGTGGTAGCAACTGCGTGTA
LOC_Os10g33760
Os.39129.1.S1_at--1140--3971Chr10:17521604..17521628 (25 bp)
CGTGTACAGGGACGAGCTCTACTTC
LOC_Os10g33760
Os.39129.1.S1_at--193--8111Chr10:17521613..17521637 (25 bp)
GGACGAGCTCTACTTCTAGCAGAAG
LOC_Os10g33760
Os.39129.1.S1_at--65--7771Chr10:17521830..17521854 (25 bp)
GGTGAGCCATATATCAAACAACTTT
LOC_Os10g33760
Target Sequence 
ACGACAACTCCGGTAGTAGCAGCGCACTGCTTAACCTGACGATGCTGCAATACAGCTTCCTAGAACATCGGCCAACTGGT
GACGACATGGCGGTGGGGGCCCACTTTGGAACATGCCAGGGTGGCAACAACGATGCCACGATGGCACTTGGGATGGGGTT
TGAGGAGCATGGCATGGGAGAGATCATAGAGATGGAACCAGCATGGCGCCAAGGTGGTAGCAACTGCGTGTACAGGGACG
AGCTCTACTTCTAGCAGAAGTAGTACAATGGATTAATATTAATGATTTGCATGTGTTAGAGTTCAGTTAAATTCAGAAAA
TATGTAGAGCTTAGAAGAGGTTTGCTAGTTTGTGATTAGAGTGTGATTATTAATTAAGGTGGAGTTNAATTAAGGGGTCG
ATTAGTTCGAGTGGTCGTGATATGNAAATATTTGTGTAATTACTCAGTTTGTAGGTGAGCCATATATCAAACAACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis