Browse Element(s) Details


Os.23116.1.A1_s_at

Description gb:CB965389
DB_XREF= gi:30227497
DB_XREF=NL21_D10
CLONE=NL21_D10
TID=Os.23116.1
CNT=20
FEA=EST
TIER=Stack
STK=19
UG=Os.23116 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2431911/1123 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g2447811/1123 kDa jasmonate-induced protein, putative, expressed
LOC_Os10g337741/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24290OsAffx.3879.1.S1_x_at1/114+13888243..13890347Protein kinase domain containing protein
LOC_Os04g24300OsAffx.3879.1.S1_x_at11/114+13894936..13900029Protein kinase domain containing protein, expressed
LOC_Os04g24310OsAffx.13951.2.S1_s_at11/114+13909491..13911306hypothetical protein
LOC_Os04g24310OsAffx.13951.2.S1_at9/114+13909491..13911306hypothetical protein
LOC_Os04g24319Os.23116.1.A1_s_at11/114+13911848..1391280123 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24319OsAffx.13951.2.S1_s_at11/114+13911848..1391280123 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24319OsAffx.13951.1.S1_at10/114+13911848..1391280123 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24328Os.55859.1.S1_at1/114+13913295..1391418123 kDa jasmonate-induced protein, putative
LOC_Os04g24340OsAffx.26128.1.S1_at11/114+13924359..13925560phytase, putative
LOC_Os04g24340OsAffx.28544.2.S1_x_at1/114+13924359..13925560phytase, putative
LOC_Os04g24350NANA4+13927740..13931709retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g24360NANA4+13933066..13933691hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0009964biological_processnegative regulation of flavonoid biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23116.1.A1_s_at--9--5812Chr04:14015854..14015878 (25 bp)
GACGCTGGAGGCGATGTCGCGGTAC
LOC_Os04g24478
Os.23116.1.A1_s_at--629--7832Chr04:14015874..14015898 (25 bp)
GGTACGCCGGGAAGAGCATCAGCCA
LOC_Os04g24478
Os.23116.1.A1_s_at--483--9672Chr04:14015892..14015916 (25 bp)
TCAGCCAGGTGGACCGCGCGCGGGA
LOC_Os04g24478
Os.23116.1.A1_s_at--980--892Chr04:14015916..14015940 (25 bp)
AGGCGATGCGCCTCATCCACGCCGA
LOC_Os04g24478
Os.23116.1.A1_s_at--654--3353Chr04:14015933..14015957 (25 bp)
CACGCCGAGGGCAAGAACCTGGACG
LOC_Os04g24478
Os.23116.1.A1_s_at--767--1072Chr04:14015940..14015964 (25 bp)
AGGGCAAGAACCTGGACGCGCTGCA
LOC_Os04g24478
Os.23116.1.A1_s_at--667--3232Chr04:14015944..14015968 (25 bp)
CAAGAACCTGGACGCGCTGCAGCAC
LOC_Os04g24478
Os.23116.1.A1_s_at--138--7592Chr04:14015975..14015999 (25 bp)
GGGCTCAAGGCCTCCTACGGCGACG
LOC_Os04g24478
Os.23116.1.A1_s_at--849--6232Chr04:14016073..14016097 (25 bp)
GATGGACTGGTACGGCTACGTCTAC
LOC_Os04g24478
Os.23116.1.A1_s_at--482--4252Chr04:14016110..14016134 (25 bp)
CCGGCGTCGTTCCAGAACGGCCAGT
LOC_Os04g24478
Os.23116.1.A1_s_at--481--4012Chr04:14016114..14016138 (25 bp)
CGTCGTTCCAGAACGGCCAGTGGCT
LOC_Os04g24478
Target Sequence 
GACGCTGGAGGCGATGTCGCGGTACGCCGGGAAGAGCATCAGCCAGGTGGACCGCGCGCGGGAGGCGATGCGCCTCATCC
ACGCCGAGGGCAAGAACCTGGACGCGCTGCAGCACGCGGTGGGGCTCAAGGCCTCCTACGGCGACGGCGTCTCCGCCATG
GTGCTCGTCTACAACGCCACCGGCGCCGCGCTGGAGCTCGTCGACGGGGAGGGCGGGACGATGGACTGGTACGGCTACGT
CTACCACGAGCAGCCGCCGGCGTCGTTCCAGAACGGCCAGTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23116.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis