Browse Element(s) Details


OsAffx.13951.2.S1_s_at

Description tigr:9632.m02269
TID=OsAffx.13951.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2431011/11hypothetical protein
LOC_Os04g2447811/1123 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g2431911/1123 kDa jasmonate-induced protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24290OsAffx.3879.1.S1_x_at1/114+13888243..13890347Protein kinase domain containing protein
LOC_Os04g24300OsAffx.3879.1.S1_x_at11/114+13894936..13900029Protein kinase domain containing protein, expressed
LOC_Os04g24310OsAffx.13951.2.S1_s_at11/114+13909491..13911306hypothetical protein
LOC_Os04g24310OsAffx.13951.2.S1_at9/114+13909491..13911306hypothetical protein
LOC_Os04g24319Os.23116.1.A1_s_at11/114+13911848..1391280123 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24319OsAffx.13951.2.S1_s_at11/114+13911848..1391280123 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24319OsAffx.13951.1.S1_at10/114+13911848..1391280123 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24328Os.55859.1.S1_at1/114+13913295..1391418123 kDa jasmonate-induced protein, putative
LOC_Os04g24340OsAffx.26128.1.S1_at11/114+13924359..13925560phytase, putative
LOC_Os04g24340OsAffx.28544.2.S1_x_at1/114+13924359..13925560phytase, putative
LOC_Os04g24350NANA4+13927740..13931709retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g24360NANA4+13933066..13933691hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13951.2.S1_s_at--275--4893Chr04:14016544..14016568 (25 bp)
GCTTACACCGAGGTACGTGAGAAAG
LOC_Os04g24478
OsAffx.13951.2.S1_s_at--1126--7833Chr04:14016555..14016579 (25 bp)
GGTACGTGAGAAAGATCACTTCCCA
LOC_Os04g24478
OsAffx.13951.2.S1_s_at--393--8913Chr04:14016561..14016585 (25 bp)
TGAGAAAGATCACTTCCCAAATTAC
LOC_Os04g24478
OsAffx.13951.2.S1_s_at--792--2953Chr04:14016616..14016640 (25 bp)
AAGGCCGGCAAAATCTGCACAGACC
LOC_Os04g24478
OsAffx.13951.2.S1_s_at--1036--3053Chr04:14016627..14016651 (25 bp)
AATCTGCACAGACCAAACCGACAAG
LOC_Os04g24478
OsAffx.13951.2.S1_s_at--253--9033Chr04:14016631..14016655 (25 bp)
TGCACAGACCAAACCGACAAGAACT
LOC_Os04g24478
OsAffx.13951.2.S1_s_at--633--5613Chr04:14016646..14016670 (25 bp)
GACAAGAACTGTGCATCAACCGTCA
LOC_Os04g24478
OsAffx.13951.2.S1_s_at--249--5473Chr04:14016651..14016675 (25 bp)
GAACTGTGCATCAACCGTCAGCGTT
LOC_Os04g24478
OsAffx.13951.2.S1_s_at--160--2633Chr04:14016663..14016687 (25 bp)
AACCGTCAGCGTTGGTGGCTGCACC
LOC_Os04g24478
OsAffx.13951.2.S1_s_at--907--7533Chr04:14016677..14016701 (25 bp)
GTGGCTGCACCTCCAGCGAATTCAT
LOC_Os04g24478
OsAffx.13951.2.S1_s_at--305--3393Chr04:14016690..14016714 (25 bp)
CAGCGAATTCATCGCGGTTCTGCAG
LOC_Os04g24478
Target Sequence 
GCTTACACCGAGGTACGTGAGAAAGATCACTTCCCAAATTACTGGGGTTACATCAAAGAAGAGAAACTGGAGAAGGCCGG
CAAAATCTGCACAGACCAAACCGACAAGAACTGTGCATCAACCGTCAGCGTTGGTGGCTGCACCTCCAGCGAATTCATCG
CGGTTCTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13951.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis