Browse Element(s) Details


OsAffx.13951.2.S1_at

Description tigr:9632.m02269
TID=OsAffx.13951.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g244909/11retrotransposon protein, putative, unclassified
LOC_Os04g243109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24440NANA4+13990348..13993368retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g24450OsAffx.31892.5.S1_at2/114+13994825..13999644retrotransposon, putative, centromere-specific
LOC_Os04g24450OsAffx.24431.1.S1_at2/114+13994825..13999644retrotransposon, putative, centromere-specific
LOC_Os04g24450OsAffx.31892.5.S1_x_at2/114+13994825..13999644retrotransposon, putative, centromere-specific
LOC_Os04g24460OsAffx.26128.1.S1_at11/114+14003269..14004470phytase, putative
LOC_Os04g24460OsAffx.28544.2.S1_x_at1/114+14003269..14004470phytase, putative
LOC_Os04g24469Os.55859.1.S1_at10/114+14014193..1401536523 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24478OsAffx.13951.2.S1_s_at11/114+14015791..1401674423 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24478Os.23116.1.A1_s_at11/114+14015791..1401674423 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24478OsAffx.13951.1.S1_at10/114+14015791..1401674423 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24490OsAffx.13951.2.S1_at9/114+14017286..14023712retrotransposon protein, putative, unclassified
LOC_Os04g24500NANA4+14025393..14027259retrotransposon protein, putative, unclassified
LOC_Os04g24510OsAffx.13954.1.S1_at11/114+14031818..14036432Protein kinase domain containing protein, expressed
LOC_Os04g24520Os.12760.2.S1_at11/114+14037914..14043157Mitochondrial ribosomal protein L51/S25/CI-B8 domain containing protein, expressed
LOC_Os04g24520Os.12760.1.S1_x_at10/114+14037914..14043157Mitochondrial ribosomal protein L51/S25/CI-B8 domain containing protein, expressed
LOC_Os04g24530OsAffx.13955.1.S1_x_at11/114+14047915..14050020AMP-binding enzyme family protein, expressed
LOC_Os04g24530OsAffx.13955.1.S1_at11/114+14047915..14050020AMP-binding enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13951.2.S1_at--600--1092Chr04:14017333..14017357 (25 bp)
AGATGTACGAGGCTGGTTGGAAGCC
LOC_Os04g24490
OsAffx.13951.2.S1_at--1132--3292Chr04:14017390..14017414 (25 bp)
CACACCACAGCATCGGAGGCTCGGT
LOC_Os04g24490
OsAffx.13951.2.S1_at--252--1712Chr04:14017393..14017417 (25 bp)
ACCACAGCATCGGAGGCTCGGTCTG
LOC_Os04g24490
OsAffx.13951.2.S1_at--513--3392Chr04:14017427..14017451 (25 bp)
CAGCGAGAGCTGATGGCGGGCGCCT
LOC_Os04g24490
OsAffx.13951.2.S1_at--971--8352Chr04:14017441..14017465 (25 bp)
GGCGGGCGCCTCATGGCATACACTA
LOC_Os04g24490
OsAffx.13951.2.S1_at--106--3992Chr04:14017443..14017467 (25 bp)
CGGGCGCCTCATGGCATACACTAGG
LOC_Os04g24490
OsAffx.13951.2.S1_at--571--8172Chr04:14017468..14017492 (25 bp)
GGAACATGAACACTTATTCCCCCAG
LOC_Os04g24490
OsAffx.13951.2.S1_at--913--652Chr04:14017473..14017497 (25 bp)
ATGAACACTTATTCCCCCAGATCAA
LOC_Os04g24490
OsAffx.13951.2.S1_at--658--4171NONE
CCCAGATCAAGCGAAATATACAGAG
NONE
OsAffx.13951.2.S1_at--927--2672Chr04:14017748..14017768 (21 bp)
AAGCGAAATATACAGAGTTCATCCG
LOC_Os04g24490
OsAffx.13951.2.S1_at--113--6071NONE
GAGTTCATCCGCTTACACCGAGGTA
NONE
Target Sequence 
AGATGTACGAGGCTGGTTGGAAGCCAACTGGGGATGCACTCGGATGGACCCAAGCTCCACACCACAGCATCGGAGGCTCG
GTCTGGGAAAGTGCCAGCGAGAGCTGATGGCGGGCGCCTCATGGCATACACTAGGGGAACATGAACACTTATTCCCCCAG
ATCAAGCGAAATATACAGAGTTCATCCGCTTACACCGAGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13951.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis