Browse Element(s) Details


OsAffx.13954.1.S1_at

Description tigr:9632.m02288
TID=OsAffx.13954.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2451011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24469Os.55859.1.S1_at10/114+14014193..1401536523 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24478OsAffx.13951.2.S1_s_at11/114+14015791..1401674423 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24478Os.23116.1.A1_s_at11/114+14015791..1401674423 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24478OsAffx.13951.1.S1_at10/114+14015791..1401674423 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24490OsAffx.13951.2.S1_at9/114+14017286..14023712retrotransposon protein, putative, unclassified
LOC_Os04g24500NANA4+14025393..14027259retrotransposon protein, putative, unclassified
LOC_Os04g24510OsAffx.13954.1.S1_at11/114+14031818..14036432Protein kinase domain containing protein, expressed
LOC_Os04g24520Os.12760.2.S1_at11/114+14037914..14043157Mitochondrial ribosomal protein L51/S25/CI-B8 domain containing protein, expressed
LOC_Os04g24520Os.12760.1.S1_x_at10/114+14037914..14043157Mitochondrial ribosomal protein L51/S25/CI-B8 domain containing protein, expressed
LOC_Os04g24530OsAffx.13955.1.S1_x_at11/114+14047915..14050020AMP-binding enzyme family protein, expressed
LOC_Os04g24530OsAffx.13955.1.S1_at11/114+14047915..14050020AMP-binding enzyme family protein, expressed
LOC_Os04g24540NANA4+14053283..14053756hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009620biological_processresponse to fungi
GO:0005618cellular_componentcell wall
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13954.1.S1_at--905--6991Chr04:14035933..14035957 (25 bp)
GTACGTCAAGATTGGTTTCTATCGA
LOC_Os04g24510
OsAffx.13954.1.S1_at--320--8731Chr04:14035970..14035994 (25 bp)
TGTCACAAAGGTGCAAGGCCCATTT
LOC_Os04g24510
OsAffx.13954.1.S1_at--1115--7831Chr04:14036066..14036090 (25 bp)
GGTACTATTGGAGCTACTTCTCATG
LOC_Os04g24510
OsAffx.13954.1.S1_at--806--2451Chr04:14036226..14036250 (25 bp)
AACAATGTTACCTTGCTTGCGGAGA
LOC_Os04g24510
OsAffx.13954.1.S1_at--719--1311Chr04:14036248..14036272 (25 bp)
AGATGTGCTTGAGTCCCCGAGGCGA
LOC_Os04g24510
OsAffx.13954.1.S1_at--753--6311Chr04:14036300..14036324 (25 bp)
GATGACATTACAGTCCTTGCGCAAT
LOC_Os04g24510
OsAffx.13954.1.S1_at--830--3451Chr04:14036310..14036334 (25 bp)
CAGTCCTTGCGCAATGTTACACAGA
LOC_Os04g24510
OsAffx.13954.1.S1_at--517--6771Chr04:14036325..14036349 (25 bp)
GTTACACAGACAACGGCTGTTCACC
LOC_Os04g24510
OsAffx.13954.1.S1_at--1143--8331Chr04:14036339..14036363 (25 bp)
GGCTGTTCACCGTGCTAATGCATCG
LOC_Os04g24510
OsAffx.13954.1.S1_at--683--9751Chr04:14036354..14036378 (25 bp)
TAATGCATCGGATCAGCTGAGCCAA
LOC_Os04g24510
OsAffx.13954.1.S1_at--704--4731Chr04:14036369..14036393 (25 bp)
GCTGAGCCAAAGATGCTATAGCCTA
LOC_Os04g24510
Target Sequence 
GTACGTCAAGATTGGTTTCTATCGATCAAACCCATATTGTCACAAAGGTGCAAGGCCCATTTGGTTATTTAGATCCAGAG
TATTGTCAAACTGAGTGTCTAAACGAAAAAAGCGATGTGTATAGTTTTGGTGTGGTACTATTGGAGCTACTTCTCATGAA
AGAGCCGATTTTTACAAGTGAGAATGGCTTAAAGTTGAATTTGGCCGGTTATTTTCTTGAGGAGGTGAAGGTAAGGCCAT
TAAGTGAGATTGTTACCACTAAGATATACGAAGAAGCAACAGAGGAAGAGATTAACAATGTTACCTTGCTTGCGGAGATG
TGCTTGAGTCCCCGAGGCGAAGAAAGACCTACCATGAAGCAAGTAGAGATGACATTACAGTCCTTGCGCAATGTTACACA
GACAACGGCTGTTCACCGTGCTAATGCATCGGATCAGCTGAGCCAAAGATGCTATAGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13954.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis