Browse Element(s) Details


OsAffx.13955.1.S1_x_at

Description tigr:9632.m02290
TID=OsAffx.13955.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AMP-binding enzyme, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2453011/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24490OsAffx.13951.2.S1_at9/114+14017286..14023712retrotransposon protein, putative, unclassified
LOC_Os04g24500NANA4+14025393..14027259retrotransposon protein, putative, unclassified
LOC_Os04g24510OsAffx.13954.1.S1_at11/114+14031818..14036432Protein kinase domain containing protein, expressed
LOC_Os04g24520Os.12760.2.S1_at11/114+14037914..14043157Mitochondrial ribosomal protein L51/S25/CI-B8 domain containing protein, expressed
LOC_Os04g24520Os.12760.1.S1_x_at10/114+14037914..14043157Mitochondrial ribosomal protein L51/S25/CI-B8 domain containing protein, expressed
LOC_Os04g24530OsAffx.13955.1.S1_x_at11/114+14047915..14050020AMP-binding enzyme family protein, expressed
LOC_Os04g24530OsAffx.13955.1.S1_at11/114+14047915..14050020AMP-binding enzyme family protein, expressed
LOC_Os04g24540NANA4+14053283..14053756hypothetical protein
LOC_Os04g24550OsAffx.26130.1.S1_x_at11/114+14064018..14070352ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os04g24550OsAffx.26130.1.S1_at11/114+14064018..14070352ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os04g24550Os.25403.1.S1_at11/114+14064018..14070352ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os04g24560OsAffx.26131.1.S1_at11/114+14074536..14074805hypothetical protein
LOC_Os04g24560OsAffx.26131.1.S1_x_at11/114+14074536..14074805hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009611biological_processresponse to wounding
GO:0009621biological_processresponse to pathogenic fungi
GO:0009698biological_processphenylpropanoid metabolism
GO:0016207molecular_function4-coumarate-CoA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13955.1.S1_x_at--242--6751Chr04:14048881..14048905 (25 bp)
GTTCATCCTGCCGAACCTGGAGGTG
LOC_Os04g24530
OsAffx.13955.1.S1_x_at--586--7331Chr04:14048859..14048883 (25 bp)
GTGAAGTTCGTGGACCCGGACACCG
LOC_Os04g24530
OsAffx.13955.1.S1_x_at--454--7991Chr04:14048755..14048779 (25 bp)
GGAGGAGACGGAGCGCACGGTGGAC
LOC_Os04g24530
OsAffx.13955.1.S1_x_at--140--9031Chr04:14048717..14048741 (25 bp)
TGCACACCGGCGACGTTGGGTACAT
LOC_Os04g24530
OsAffx.13955.1.S1_x_at--544--5751Chr04:14048706..14048730 (25 bp)
GACGTTGGGTACATCGACGGCGACG
LOC_Os04g24530
OsAffx.13955.1.S1_x_at--24--4611Chr04:14048681..14048705 (25 bp)
GCGACGTGTTCATCGTGGACAGGAT
LOC_Os04g24530
OsAffx.13955.1.S1_x_at--1000--3991Chr04:14048677..14048701 (25 bp)
CGTGTTCATCGTGGACAGGATCAAG
LOC_Os04g24530
OsAffx.13955.1.S1_x_at--732--7031Chr04:14048202..14048226 (25 bp)
GTACAAGCGGGTCCGGGTGCTGCAC
LOC_Os04g24530
OsAffx.13955.1.S1_x_at--1125--7691Chr04:14048188..14048212 (25 bp)
GGGTGCTGCACATCGTCGACGCCAT
LOC_Os04g24530
OsAffx.13955.1.S1_x_at--565--4431Chr04:14048168..14048192 (25 bp)
GCCATCCCCAAGTCGGTGTCCGGGA
LOC_Os04g24530
OsAffx.13955.1.S1_x_at--565--4371Chr04:14048161..14048185 (25 bp)
CCAAGTCGGTGTCCGGGAAGATCCT
LOC_Os04g24530
Target Sequence 
GTTCATCCTGCCGAACCTGGAGGTGAAGTTCGTGGACCCGGACACCGGGAGGTCGCTGCCGGCGAACACGCCGGGGGAGC
TGTGCGTGCGGAGCCAGAGCGTGATGCAGGGGTACTACAAGAGGAAGGAGGAGACGGAGCGCACGGTGGACGGCAAGGGG
TGGCTGCACACCGGCGACGTTGGGTACATCGACGGCGACGGCGACGTGTTCATCGTGGACAGGATCAAGGAGCTGATCAA
GTACAAGGGGTTTCAGGTCGCCCCCGCCGAGCTCGAGGCCGTCCTCCTCTCCCACCCCTCCGTTGAGGACGCCGCCGTCT
TCGGGGTGCCGGACGAGGAGGCCGGCGAGGTGCCGGTGGCGTGCGTGGTGCGGCGGCACGGTGCGGAGGAGGGGGAGGAG
GAGATAGTGGCGTACGTGGCGGAGAGGGTGGCGTCGTACAAGCGGGTCCGGGTGCTGCACATCGTCGACGCCATCCCCAA
GTCGGTGTCCGGGAAGATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13955.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis