Browse Element(s) Details


OsAffx.26131.1.S1_x_at

Description tigr:9632.m02293
TID=OsAffx.26131.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2456011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24530OsAffx.13955.1.S1_x_at11/114+14047915..14050020AMP-binding enzyme family protein, expressed
LOC_Os04g24530OsAffx.13955.1.S1_at11/114+14047915..14050020AMP-binding enzyme family protein, expressed
LOC_Os04g24540NANA4+14053283..14053756hypothetical protein
LOC_Os04g24550OsAffx.26130.1.S1_x_at11/114+14064018..14070352ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os04g24550OsAffx.26130.1.S1_at11/114+14064018..14070352ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os04g24550Os.25403.1.S1_at11/114+14064018..14070352ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os04g24560OsAffx.26131.1.S1_at11/114+14074536..14074805hypothetical protein
LOC_Os04g24560OsAffx.26131.1.S1_x_at11/114+14074536..14074805hypothetical protein
LOC_Os04g24570OsAffx.17830.2.S1_x_at1/114+14081675..14087934retrotransposon protein, putative, unclassified
LOC_Os04g24580NANA4+14092802..14095753retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g24590Os.10703.2.S1_x_at1/114+14096070..14102165retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26131.1.S1_x_at--999--24920Chr12:19960565..19960589 (25 bp)
AACATAGACGCCACAAAGCCACAAG
NONE
OsAffx.26131.1.S1_x_at--689--10036Chr10:4415774..4416139 (25 bp)
TAGACGCCACAAAGCCACAAGCCTA
NONE
OsAffx.26131.1.S1_x_at--591--2651Chr04:14074721..14074745 (25 bp)
AAGCCACAAGCCTACATACGACAAG
LOC_Os04g24560
OsAffx.26131.1.S1_x_at--762--5616Chr12:23421963..23421987 (25 bp)
GACAAGCTGCTAGATATCGACATCA
NONE
OsAffx.26131.1.S1_x_at--220--6471Chr04:14074670..14074694 (25 bp)
GATAAGCCAAGGAAAACCTCATATG
LOC_Os04g24560
OsAffx.26131.1.S1_x_at--264--1691Chr04:14074666..14074690 (25 bp)
AGCCAAGGAAAACCTCATATGGTAC
LOC_Os04g24560
OsAffx.26131.1.S1_x_at--276--6031Chr04:14074627..14074651 (25 bp)
GAGAGGAATCTAGCGATGTCTTTGA
LOC_Os04g24560
OsAffx.26131.1.S1_x_at--326--8211Chr04:14074623..14074647 (25 bp)
GGAATCTAGCGATGTCTTTGATCTC
LOC_Os04g24560
OsAffx.26131.1.S1_x_at--235--3233Chr04:5201280..5201300 (21 bp)
CAAGCACGGATTCAAGGAGAAAGAG
NONE
OsAffx.26131.1.S1_x_at--867--5551Chr04:14074578..14074602 (25 bp)
GAAAGAGTACTCTGTTGTCGACTAC
LOC_Os04g24560
OsAffx.26131.1.S1_x_at--1068--8813Chr09:16831028..16831052 (25 bp)
TGTTGTCGACTACGCGATGATACTT
NONE
Target Sequence 
AACATAGACGCCACAAAGCCACAAGCCTACATACGACAAGACAAGCTGCTAGATATCGACATCAGAGATAAGCCAAGGAA
AACCTCATATGGTACCTACGGGAACCAAAGAGAGGAATCTAGCGATGTCTTTGATCTCGCCAAGCACGGATTCAAGGAGA
AAGAGTACTCTGTTGTCGACTACGCGATGATACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26131.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis