Browse Element(s) Details


OsAffx.26130.1.S1_x_at

Description tigr:9632.m02292
TID=OsAffx.26130.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2455011/11ATP-binding region, ATPase-like domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24520Os.12760.2.S1_at11/114+14037914..14043157Mitochondrial ribosomal protein L51/S25/CI-B8 domain containing protein, expressed
LOC_Os04g24520Os.12760.1.S1_x_at10/114+14037914..14043157Mitochondrial ribosomal protein L51/S25/CI-B8 domain containing protein, expressed
LOC_Os04g24530OsAffx.13955.1.S1_x_at11/114+14047915..14050020AMP-binding enzyme family protein, expressed
LOC_Os04g24530OsAffx.13955.1.S1_at11/114+14047915..14050020AMP-binding enzyme family protein, expressed
LOC_Os04g24540NANA4+14053283..14053756hypothetical protein
LOC_Os04g24550OsAffx.26130.1.S1_x_at11/114+14064018..14070352ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os04g24550OsAffx.26130.1.S1_at11/114+14064018..14070352ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os04g24550Os.25403.1.S1_at11/114+14064018..14070352ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os04g24560OsAffx.26131.1.S1_at11/114+14074536..14074805hypothetical protein
LOC_Os04g24560OsAffx.26131.1.S1_x_at11/114+14074536..14074805hypothetical protein
LOC_Os04g24570OsAffx.17830.2.S1_x_at1/114+14081675..14087934retrotransposon protein, putative, unclassified
LOC_Os04g24580NANA4+14092802..14095753retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26130.1.S1_x_at--80--8831Chr04:14067281..14067305 (25 bp)
TGATTCTGAGTTTGTGGGCGCCCCA
LOC_Os04g24550
OsAffx.26130.1.S1_x_at--1061--6391Chr04:14067322..14067346 (25 bp)
GATCTCATATCCTGAATCCACATAG
LOC_Os04g24550
OsAffx.26130.1.S1_x_at--707--5271Chr04:14067359..14067383 (25 bp)
GAATGGGACTGCTTTGGCAACACCT
LOC_Os04g24550
OsAffx.26130.1.S1_x_at--810--5531Chr04:14067412..14067436 (25 bp)
GAAACAAAACTGCATCCCAGCCTGT
LOC_Os04g24550
OsAffx.26130.1.S1_x_at--684--10451Chr04:14068914..14069003 (25 bp)
TTCCCACAGTTTACTAAGGTTACTG
LOC_Os04g24550
OsAffx.26130.1.S1_x_at--387--431Chr04:14069015..14069039 (25 bp)
ATCATTGTCACAGGAGCTGGCGATT
LOC_Os04g24550
OsAffx.26130.1.S1_x_at--746--2531Chr04:14069286..14069310 (25 bp)
AACTAAGTGTTTATCTCAGTACTTG
LOC_Os04g24550
OsAffx.26130.1.S1_x_at--282--9651Chr04:14069301..14069325 (25 bp)
TCAGTACTTGTTGAGTGCTTCACAT
LOC_Os04g24550
OsAffx.26130.1.S1_x_at--68--4911Chr04:14069317..14069337 (21 bp)
GCTTCACATTTCCTCATGCAGTTAG
LOC_Os04g24550
OsAffx.26130.1.S1_x_at--718--2711Chr04:14069703..14069727 (25 bp)
AAGCATTGATTGACATCTTCTCAGA
LOC_Os04g24550
OsAffx.26130.1.S1_x_at--783--2911Chr04:14069869..14069892 (24 bp)
AAGGATGCTTCTTCTACCATACAAG
LOC_Os04g24550
Target Sequence 
TGATTCTGAGTTTGTGGGCGCCCCAACTCCAACAAGTTCAAGATCTCATATCCTGAATCCACATAGAAAATCTTTCCAGA
ATGGGACTGCTTTGGCAACACCTCCATCCAATGGACGGACAGAAAGAGAGAGAAACAAAACTGCATCCCAGCCTGTGCAA
CTTAATGCAACAAGTAATGGGGATTATACTATTGATGATCATGAGACTATTATCAAGCAACTGAGGGGCGAAAACTCATC
GTTGAAGGAAAGTAACATTTTTTCCCACAGTTTACTAAGGTTACTGAAGGTGGAAGAATCATTGTCACAGGAGCTGGCGA
TTGAACGTGATAAGAACAAATCGTTAACAGAGAGGCAAACTAAGTGTTTATCTCAGTACTTGTTGAGTGCTTCACATTTC
CTCATGCAGTTAGAGGATGCACAGAGGCAACTAGAAACTTCAAACAAGGAACAAGAAGCATTGATTGACATCTTCTCAGA
AGAAAGAGGTCGACGAGACCTAGAAGAGGAAAATCTGCGAGGGAAGCTAAAGGATGCTTCTTCTACCATACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26130.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis