Browse Element(s) Details


OsAffx.3879.1.S1_x_at

Description tigr:9632.m02268
TID=OsAffx.3879.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2430011/11Protein kinase domain containing protein, expressed
LOC_Os04g242901/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24250OsAffx.26124.1.S1_at11/114+13870621..13870890hypothetical protein
LOC_Os04g24260OsAffx.20604.2.S1_at2/114+13872416..13876888retrotransposon protein, putative, unclassified
LOC_Os04g24260OsAffx.10371.1.S1_at1/114+13872416..13876888retrotransposon protein, putative, unclassified
LOC_Os04g24274OsAffx.26126.1.S1_at11/114+13878191..13883296expressed protein
LOC_Os04g24274OsAffx.26125.1.S1_at11/114+13878191..13883296expressed protein
LOC_Os04g24274Os.20069.2.S1_at1/114+13878191..13883296expressed protein
LOC_Os04g24290OsAffx.3879.1.S1_x_at1/114+13888243..13890347Protein kinase domain containing protein
LOC_Os04g24300OsAffx.3879.1.S1_x_at11/114+13894936..13900029Protein kinase domain containing protein, expressed
LOC_Os04g24310OsAffx.13951.2.S1_s_at11/114+13909491..13911306hypothetical protein
LOC_Os04g24310OsAffx.13951.2.S1_at9/114+13909491..13911306hypothetical protein
LOC_Os04g24319Os.23116.1.A1_s_at11/114+13911848..1391280123 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24319OsAffx.13951.2.S1_s_at11/114+13911848..1391280123 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24319OsAffx.13951.1.S1_at10/114+13911848..1391280123 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24328Os.55859.1.S1_at1/114+13913295..1391418123 kDa jasmonate-induced protein, putative
LOC_Os04g24340OsAffx.26128.1.S1_at11/114+13924359..13925560phytase, putative
LOC_Os04g24340OsAffx.28544.2.S1_x_at1/114+13924359..13925560phytase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009620biological_processresponse to fungi
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3879.1.S1_x_at--126--10171Chr04:13899431..13899455 (25 bp)
TATCAGACTTTGGTGCTTCAAGATT
LOC_Os04g24300
OsAffx.3879.1.S1_x_at--443--6691Chr04:13899457..13899481 (25 bp)
GTTCCAATTGACCAGACTCACGTAG
LOC_Os04g24300
OsAffx.3879.1.S1_x_at--475--1411Chr04:13899638..13899662 (25 bp)
AGAACTTGTCCAATTACTTCCTTTG
LOC_Os04g24300
OsAffx.3879.1.S1_x_at--1014--6491Chr04:13899690..13899714 (25 bp)
GATAGTTGCAGCCTACGTTCATGAG
LOC_Os04g24300
OsAffx.3879.1.S1_x_at--590--9831Chr04:13899734..13899758 (25 bp)
TAAACAGTGTCGCTTCTCTTGCAGA
LOC_Os04g24300
OsAffx.3879.1.S1_x_at--234--5972Chr04:13899757..13899781 (25 bp)
GAGAAGTGCTTGATGCTCCGAAGTG
LOC_Os04g24300
OsAffx.3879.1.S1_x_at--42--3011Chr04:13899810..13899834 (25 bp)
AATGACTTTACAGTTCTTGCGAACA
LOC_Os04g24300
OsAffx.3879.1.S1_x_at--1080--9611Chr04:13899847..13899871 (25 bp)
TCATGCCATGCTACTCCAGAAAACG
LOC_Os04g24300
OsAffx.3879.1.S1_x_at--36--9031Chr04:13899881..13899905 (25 bp)
TGCAACAGTTGCTACCGAGAAGGTC
LOC_Os04g24300
OsAffx.3879.1.S1_x_at--1055--2471Chr04:13899943..13899967 (25 bp)
AACAGTGCTAATTCTGAGTCTCGAA
LOC_Os04g24300
OsAffx.3879.1.S1_x_at--54--6111Chr04:13899958..13899982 (25 bp)
GAGTCTCGAAATAGCCTCAAATGCT
LOC_Os04g24300
Target Sequence 
TATCAGACTTTGGTGCTTCAAGATTGGTTCCAATTGACCAGACTCACGTAGTTACAAATGTACAGGGTACATTTGGCTAC
TTAGATCCAGAGTATTACCATACTGGGCAGCTGAATGAGAAGAGTGATGTATATAGTTTTGGTGTGGTACTTGTGGAACT
ACTAATCAGAAGAGAACCTATTTTTACAACAGTATCAGGATCAAAGCAGAACTTGTCCAATTACTTCCTTTGGGAGCTGA
AGGTAAAGCCAATCAAAGAGATAGTTGCAGCCTACGTTCATGAGGAAGCTACTGAGGATGAGATAAACAGTGTCGCTTCT
CTTGCAGAGAAGTGCTTGATGCTCCGAAGTGAAGATAGGCCTACAATGAAGCAAGTTGAAATGACTTTACAGTTCTTGCG
AACAAAAAAGTTGAACTCATGCCATGCTACTCCAGAAAACGATGAAGAGCTGCAACAGTTGCTACCGAGAAGGTCTGAAG
CTAGTTGCGAGCAAGTGGCTGTTAACTTGGGTAACAGTGCTAATTCTGAGTCTCGAAATAGCCTCAAATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3879.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis