Browse Element(s) Details


OsAffx.7720.1.S1_at

Description tigr:9640.m02667
TID=OsAffx.7720.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2774011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27700NANA12+16330720..16333695retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27710NANA12+16334011..16340121retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27720OsAffx.7719.1.S1_at11/1112+16345879..16346346hypothetical protein
LOC_Os12g27730OsAffx.19542.3.S1_x_at3/1112+16349666..16353605retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g27740OsAffx.7720.1.S1_at11/1112+16357983..16358513hypothetical protein
LOC_Os12g27750OsAffx.31905.1.S1_at11/1112+16361924..16363303F-box domain containing protein
LOC_Os12g27760OsAffx.19858.2.S1_at11/1112+16365231..16366466F-box domain containing protein
LOC_Os12g27770OsAffx.31222.2.S1_at8/1112+16367409..16370946transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g27770OsAffx.31222.2.S1_x_at7/1112+16367409..16370946transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g27770OsAffx.31222.1.S1_at4/1112+16367409..16370946transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g27780OsAffx.92.1.S1_at9/1112+16373383..16377656transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27790OsAffx.19858.1.S1_x_at11/1112+16379526..16381318F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7720.1.S1_at--703--2751Chr12:16358048..16358072 (25 bp)
AAGAACACATTCATGGAATCGATCA
LOC_Os12g27740
OsAffx.7720.1.S1_at--485--10191Chr12:16358178..16358202 (25 bp)
TATATATACTACGAGCTTGTGGCTA
LOC_Os12g27740
OsAffx.7720.1.S1_at--971--3711Chr12:16358186..16358210 (25 bp)
CTACGAGCTTGTGGCTATGGAAGAT
LOC_Os12g27740
OsAffx.7720.1.S1_at--190--671Chr12:16358209..16358233 (25 bp)
ATGAAGCAGTGGCACAGATCGACGA
LOC_Os12g27740
OsAffx.7720.1.S1_at--272--6131Chr12:16358232..16358256 (25 bp)
GAGGGCGGCGCTACCACCAGTGCTC
LOC_Os12g27740
OsAffx.7720.1.S1_at--1120--1531Chr12:16358298..16358322 (25 bp)
AGCATCCTCATTGCATGCGGTCACT
LOC_Os12g27740
OsAffx.7720.1.S1_at--850--611Chr12:16358312..16358336 (25 bp)
ATGCGGTCACTACTTGTCGTCGAGC
LOC_Os12g27740
OsAffx.7720.1.S1_at--783--9451Chr12:16358337..16358361 (25 bp)
TCGGCGCCAAAGTCAGTGAGCCTGG
LOC_Os12g27740
OsAffx.7720.1.S1_at--150--8931Chr12:16358353..16358377 (25 bp)
TGAGCCTGGCCTGTGGCAGCTGCAC
LOC_Os12g27740
OsAffx.7720.1.S1_at--318--1611Chr12:16358370..16358394 (25 bp)
AGCTGCACCGGCACAGCCACGGTGA
LOC_Os12g27740
OsAffx.7720.1.S1_at--214--1751Chr12:16358412..16358436 (25 bp)
ACCTCCACCTATGGACTAGTGGTTT
LOC_Os12g27740
Target Sequence 
AAGAACACATTCATGGAATCGATCAAAATTGCAACAGAAAATGAAAATAAACAGGGCAAGGAATGTAGTGTGGGGCAAGT
TGGTAGTGATGGTAGAGGAGCGGGTCGAGGCAATGGAGGTGGATGTTGGATATATATACTACGAGCTTGTGGCTATGGAA
GATGAAGCAGTGGCACAGATCGACGAGGGCGGCGCTACCACCAGTGCTCCTCAACCTTGCCACCATCACTCCTCCTCTGC
CGCCACCACCAGCATCCTCATTGCATGCGGTCACTACTTGTCGTCGAGCTCGGCGCCAAAGTCAGTGAGCCTGGCCTGTG
GCAGCTGCACCGGCACAGCCACGGTGACCACGTCCTCTCCCTCCACCTCCACCTATGGACTAGTGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7720.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis