Browse Element(s) Details


OsAffx.7754.1.S1_x_at

Description tigr:9640.m03041
TID=OsAffx.7754.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g314209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31370Os.19630.1.S1_at11/1112+18847550..18850637DNA repair protein RAD51 homolog B, putative, expressed
LOC_Os12g31380Os.18456.2.S1_x_at11/1112+18850839..18853828Initiation factor 2 subunit family protein, expressed
LOC_Os12g31390OsAffx.7753.1.S1_at11/1112+18855176..18855801hypothetical protein
LOC_Os12g31400OsAffx.31962.1.S1_at11/1112+18863067..18863711hypothetical protein
LOC_Os12g31410OsAffx.31962.1.S1_at2/1112+18864745..18866782expressed protein
LOC_Os12g31420OsAffx.7754.1.S1_x_at9/1112+18869607..18871005hypothetical protein
LOC_Os12g31430OsAffx.19913.1.S1_at11/1112+18875110..18876100Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g31430OsAffx.19913.1.S1_x_at11/1112+18875110..18876100Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g31440Os.7896.1.S1_at11/1112+18880310..18884363expressed protein
LOC_Os12g31440Os.7896.2.S1_at10/1112+18880310..18884363expressed protein
LOC_Os12g31450Os.49573.1.S1_at11/1112+18884734..18887126plastid division regulator MinE, putative, expressed
LOC_Os12g31460OsAffx.7755.1.S1_s_at11/1112+18889665..18892094DnaJ domain containing protein, expressed
LOC_Os12g31470NANA12+18894239..18902927retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7754.1.S1_x_at--1056--4651Chr12:18870846..18870870 (25 bp)
GCGGGTAGCGGTGATTGCGACGGGC
LOC_Os12g31420
OsAffx.7754.1.S1_x_at--440--911NONE
AGGCGGCGATTCGATGGATGTTACA
NONE
OsAffx.7754.1.S1_x_at--293--9391NONE
TCGATGGATGTTACAGGCTCCAACT
NONE
OsAffx.7754.1.S1_x_at--374--6251Chr12:18869885..18869905 (21 bp)
GATGGATGTTACAGGCTCCAACTTC
LOC_Os12g31420
OsAffx.7754.1.S1_x_at--387--7991Chr12:18869882..18869905 (24 bp)
GGATGTTACAGGCTCCAACTTCCAC
LOC_Os12g31420
OsAffx.7754.1.S1_x_at--419--8791Chr12:18869879..18869903 (25 bp)
TGTTACAGGCTCCAACTTCCACAAG
LOC_Os12g31420
OsAffx.7754.1.S1_x_at--369--10471Chr12:18869877..18869901 (25 bp)
TTACAGGCTCCAACTTCCACAAGTC
LOC_Os12g31420
OsAffx.7754.1.S1_x_at--734--10652Chr10:3382484..3382508 (25 bp)
TTCCACAAGTCCTCGTCGTCTCTCG
NONE
OsAffx.7754.1.S1_x_at--497--1831Chr12:18869806..18869830 (25 bp)
ACGCGCTTGTCCTCGGTGCCACCTT
LOC_Os12g31420
OsAffx.7754.1.S1_x_at--678--9431Chr12:18869794..18869818 (25 bp)
TCGGTGCCACCTTCCTCAAGCTTCG
LOC_Os12g31420
OsAffx.7754.1.S1_x_at--684--9711Chr12:18869779..18869803 (25 bp)
TCAAGCTTCGCTGCCGTGATGAGGT
LOC_Os12g31420
Target Sequence 
GCGGGTAGCGGTGATTGCGACGGGCGGGCGGCGCGGCTCGGCACGGGGCTCGGCGCGACGACGACGGCGACGCGACGGGC
GAGCGGCGCGGCAGTAGCGCGGGGCGCGAGGCGGCGATTCGATGGATGTTACAGGCTCCAACTTCCACAAGTCCTCGTCG
TCTCTCGCCGCCCTCCTCGCTGGCGGAAGCTCGCCAACCACGCGCTTGTCCTCGGTGCCACCTTCCTCAAGCTTCGCTGC
CGTGATGAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7754.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis