Browse Element(s) Details


OsAffx.7755.1.S1_s_at

Description tigr:9640.m03045
TID=OsAffx.7755.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to DnaJ domain family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3146011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31410OsAffx.31962.1.S1_at2/1112+18864745..18866782expressed protein
LOC_Os12g31420OsAffx.7754.1.S1_x_at9/1112+18869607..18871005hypothetical protein
LOC_Os12g31430OsAffx.19913.1.S1_at11/1112+18875110..18876100Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g31430OsAffx.19913.1.S1_x_at11/1112+18875110..18876100Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g31440Os.7896.1.S1_at11/1112+18880310..18884363expressed protein
LOC_Os12g31440Os.7896.2.S1_at10/1112+18880310..18884363expressed protein
LOC_Os12g31450Os.49573.1.S1_at11/1112+18884734..18887126plastid division regulator MinE, putative, expressed
LOC_Os12g31460OsAffx.7755.1.S1_s_at11/1112+18889665..18892094DnaJ domain containing protein, expressed
LOC_Os12g31470NANA12+18894239..18902927retrotransposon protein, putative, unclassified
LOC_Os12g31480Os.24542.1.S1_at10/1112+18904325..18907546expressed protein
LOC_Os12g31490Os.12422.1.S1_at11/1112+18910313..18915235expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7755.1.S1_s_at--414--4711Chr12:18891361..18891749 (25 bp)
GCGGCCTCGCAATCACAGAATGTGA
LOC_Os12g31460
OsAffx.7755.1.S1_s_at--456--8631Chr12:18891330..18891354 (25 bp)
TGGGAGGCTTGGGATCACCAGATCA
LOC_Os12g31460
OsAffx.7755.1.S1_s_at--283--1731Chr12:18891314..18891338 (25 bp)
ACCAGATCAGCTTCTACCGATGAGG
LOC_Os12g31460
OsAffx.7755.1.S1_s_at--386--2271Chr12:18890262..18890284 (23 bp)
AAAGGAATCTTTTACCATACTATGG
LOC_Os12g31460
OsAffx.7755.1.S1_s_at--131--251Chr12:18890178..18890202 (25 bp)
ATATGTCTGGCCTTTCGAAGTCGAT
LOC_Os12g31460
OsAffx.7755.1.S1_s_at--577--5331Chr12:18890162..18890186 (25 bp)
GAAGTCGATCCCATGGAGCTAGCAC
LOC_Os12g31460
OsAffx.7755.1.S1_s_at--649--8271Chr12:18889894..18889918 (25 bp)
GGCTACTTTTTCCTGGCATGGTTCA
LOC_Os12g31460
OsAffx.7755.1.S1_s_at--982--3911Chr12:18889882..18889906 (25 bp)
CTGGCATGGTTCATACTATCTGTTG
LOC_Os12g31460
OsAffx.7755.1.S1_s_at--339--10811Chr12:18889855..18889879 (25 bp)
TTGTCAGTAACCCTCAACAGATGAT
LOC_Os12g31460
OsAffx.7755.1.S1_s_at--133--8771Chr12:18889823..18889847 (25 bp)
TGTAGTTGTAATCCAGCACTCCTTT
LOC_Os12g31460
OsAffx.7755.1.S1_s_at--310--5271Chr12:18889786..18889810 (25 bp)
GAATGCTCTGCATGACTACATGTAT
LOC_Os12g31460
Target Sequence 
GCGGCCTCGCAATCACAGAATGTGATCATTATGGGAGGCTTGGGATCACCAGATCAGCTTCTACCGATGAGGTTAAAGCC
GCCTACGAGAAGAAGTGCGAAGAACTGAATAGCAAAGGATTGGAAGAAGAGGAAATCAACAAGGAGCATGACCTCCTAAA
GGAATCTTTTACCATACTATGGACCGAGGAAGAGAGAAGATTATACGATTGGAGTTTGGCAAGAAGTGGAAAGCCTGAGC
GATATGTCTGGCCTTTCGAAGTCGATCCCATGGAGCTAGCACCAGATCCTCCAAAGGAACCAGAAGATGAGTTCCCAACA
AAGCTGGTTGGCTACTTTTTCCTGGCATGGTTCATACTATCTGTTGCCTTGTCAGTAACCCTCAACAGATGATGAGTAGC
TGTAGTTGTAATCCAGCACTCCTTTCGGCGTCACCATGAATGCTCTGCATGACTACATGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7755.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis