Browse Element(s) Details


OsAffx.7768.1.S1_at

Description tigr:9640.m03154
TID=OsAffx.7768.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3245011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32420OsAffx.20387.1.S1_x_at2/1112+19524176..19527561retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g32430OsAffx.17106.1.S1_x_at1/1112+19529092..19531519retrotransposon protein, putative, unclassified
LOC_Os12g32430Os.25754.2.S1_x_at1/1112+19529092..19531519retrotransposon protein, putative, unclassified
LOC_Os12g32434OsAffx.31981.1.S1_x_at11/1112+19535492..19536601hypothetical protein
LOC_Os12g32434OsAffx.31981.1.S1_at11/1112+19535492..19536601hypothetical protein
LOC_Os12g32440Os.41248.4.S1_x_at3/1112+19540387..19546403retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g32450OsAffx.7768.1.S1_at11/1112+19550313..19556635expressed protein
LOC_Os12g32470Os.52827.1.S1_at10/1112+19568465..19573686expressed protein
LOC_Os12g32480Os.54476.1.S1_at11/1112+19580421..19583289expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7768.1.S1_at--584--10631Chr12:19551284..19551308 (25 bp)
TTCGAGGACGTATCAGCACGACCTT
LOC_Os12g32450
OsAffx.7768.1.S1_at--801--5091Chr12:19551269..19551293 (25 bp)
GCACGACCTTGCAGATTTTGGTACA
LOC_Os12g32450
OsAffx.7768.1.S1_at--156--7031Chr12:19551249..19551273 (25 bp)
GTACATTTCTGTGCCAGACTCCATA
LOC_Os12g32450
OsAffx.7768.1.S1_at--121--491Chr12:19551223..19551247 (25 bp)
ATCGGTGCCTCCAAATGCACTAGTT
LOC_Os12g32450
OsAffx.7768.1.S1_at--194--9031Chr12:19551208..19551232 (25 bp)
TGCACTAGTTGGACGGGATTTCATT
LOC_Os12g32450
OsAffx.7768.1.S1_at--846--3291Chr12:19550838..19551183 (25 bp)
CACAACGGTACTTATGGGCTGACAT
LOC_Os12g32450
OsAffx.7768.1.S1_at--308--5531Chr12:19550720..19550744 (25 bp)
GAAAACGGCTTTTTGTGATGCATGT
LOC_Os12g32450
OsAffx.7768.1.S1_at--434--9791Chr12:19550649..19550673 (25 bp)
TAAGTTGTTGCCCAGCTTCTGTCAA
LOC_Os12g32450
OsAffx.7768.1.S1_at--15--7831Chr12:19550407..19550431 (25 bp)
GGTCAGATGCACATTTCTGCCACAA
LOC_Os12g32450
OsAffx.7768.1.S1_at--1043--10031Chr12:19550380..19550404 (25 bp)
TAGAGCAACTTTTTCCAGGGTTCAT
LOC_Os12g32450
OsAffx.7768.1.S1_at--1157--691Chr12:19550357..19550381 (25 bp)
ATGAGTGTGGCCTACGCACTTTCAA
LOC_Os12g32450
Target Sequence 
TTCGAGGACGTATCAGCACGACCTTGCAGATTTTGGTACATTTCTGTGCCAGACTCCATACATCGGTGCCTCCAAATGCA
CTAGTTGGACGGGATTTCATTTCTTAATAAATTCAAATGCAATGTCACAACGGTACTTATGGGCTGACATAGTTAAGGGG
CATCCACTTTTTCTTGATCCGCCATCAAAACTTAGATGTTACGTGAATCTGTTTGAGTGGTCAGAATTGATCCAAATATC
AGAGAAAACGGCTTTTTGTGATGCATGTTACAAATTAATGCCTGATCTCACACAAAAAACACTTTGGGGTTGGATAAGTT
GTTGCCCAGCTTCTGTCAAGATTTATTTGAATCAAGCTTATAAAGGAATTAGCATCTATGAAGATATCATCACTTTTGTA
AAGAACATGATACTTCATGGAAGACAGGAACTCATGAATGCAAATGGGGGGCGATGGTCAGATGCACATTTCTGCCACAA
AATAGAGCAACTTTTTCCAGGGTTCATGAGTGTGGCCTACGCACTTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7768.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis