Browse Element(s) Details


OsAffx.7786.1.S1_at

Description tigr:9640.m03294
TID=OsAffx.7786.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3410011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34100OsAffx.7786.1.S1_at11/1112+20608433..20610797hypothetical protein
LOC_Os12g34110OsAffx.32292.1.S1_x_at11/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110OsAffx.23061.1.S1_at10/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110OsAffx.23061.2.S1_at9/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110OsAffx.23061.1.S2_at9/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110Os.13521.1.S1_at2/1112+20622985..20629882ATP synthase subunit C family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7786.1.S1_at--1140--2771Chr12:20610738..20610762 (25 bp)
AAGAGATACGGTTGGTTGGCTGAAT
LOC_Os12g34100
OsAffx.7786.1.S1_at--744--3011Chr12:20610707..20610731 (25 bp)
AATGCTATTCTAATGGGAACCGGGA
LOC_Os12g34100
OsAffx.7786.1.S1_at--784--5271Chr12:20610679..20610703 (25 bp)
GAATGGTTCCCAATACAGGGCCCGA
LOC_Os12g34100
OsAffx.7786.1.S1_at--638--6691Chr12:20610254..20610278 (25 bp)
GTTGCCAACTAAGCTCTCTTACGTA
LOC_Os12g34100
OsAffx.7786.1.S1_at--618--10471Chr12:20610236..20610260 (25 bp)
TTACGTACCAACTGAGCCACTTATT
LOC_Os12g34100
OsAffx.7786.1.S1_at--860--3851Chr12:20610225..20610249 (25 bp)
CTGAGCCACTTATTTACAACGGAAA
LOC_Os12g34100
OsAffx.7786.1.S1_at--776--10092Chr12:20608562..20608586 (25 bp)
TAGGACATACGCTTTATCGCAGAAC
LOC_Os12g34100
OsAffx.7786.1.S1_at--719--10153Chr12:13369363..13369387 (25 bp)
TATCGCAGAACATCTATTTGCTTTC
NONE
OsAffx.7786.1.S1_at--817--193Chr12:13369378..13369402 (25 bp)
ATTTGCTTTCTATTCGACAAGAAGG
NONE
OsAffx.7786.1.S1_at--623--3314Chr12:13369429..13369453 (25 bp)
CACAGGTCCTGGCACTATTGGAAAA
NONE
OsAffx.7786.1.S1_at--104--10874Chr12:13369446..13369470 (25 bp)
TTGGAAAATGAAGCTCTCTCAGTTC
NONE
Target Sequence 
AAGAGATACGGTTGGTTGGCTGAATGGAAGGAATGCTATTCTAATGGGAACCGGGAAAAGAATGGTTCCCAATACAGGGC
CCGAAGAAGAGAGACGAAAGAAAGTAGTGAAAGAAGAAATAAACACGTTGCCAACTAAGCTCTCTTACGTACCAACTGAG
CCACTTATTTACAACGGAAAGAAAGAGGGCTACTTAGGAAGCAAGGTTACAGTCAGAGGAAATAAGAAGTATGGTAAGAT
GAATGAAAGGCAAAAATATAGGACATACGCTTTATCGCAGAACATCTATTTGCTTTCTATTCGACAAGAAGGACAAGGAA
AAGATAATGGATATGGAACACAGGTCCTGGCACTATTGGAAAATGAAGCTCTCTCAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis