Browse Element(s) Details


OsAffx.7797.1.S1_at

Description tigr:9640.m03425
TID=OsAffx.7797.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3542011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35390NANA12+21486583..21487042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g35400OsAffx.7796.1.S1_at10/1112+21495264..21499408hypothetical protein
LOC_Os12g35410OsAffx.19975.1.S1_at11/1112+21499734..21505180AT hook motif-containing protein, putative
LOC_Os12g35410Os.27102.1.S1_x_at1/1112+21499734..21505180AT hook motif-containing protein, putative
LOC_Os12g35420OsAffx.7797.1.S1_at11/1112+21508424..21508750hypothetical protein
LOC_Os12g35430Os.53320.2.S1_s_at6/1112+21509799..21512827transposon protein, putative, Mutator sub-class
LOC_Os12g35430Os.53320.1.S1_at5/1112+21509799..21512827transposon protein, putative, Mutator sub-class
LOC_Os12g35430Os.53320.1.S1_s_at5/1112+21509799..21512827transposon protein, putative, Mutator sub-class
LOC_Os12g35430Os.53320.2.S1_x_at4/1112+21509799..21512827transposon protein, putative, Mutator sub-class
LOC_Os12g35440OsAffx.32035.1.S1_at11/1112+21515914..21516225hypothetical protein
LOC_Os12g35450NANA12+21521436..21521825hypothetical protein
LOC_Os12g35460Os.53119.1.S1_at11/1112+21523971..21534835AT hook motif-containing protein, putative, expressed
LOC_Os12g35460Os.52319.1.S1_x_at11/1112+21523971..21534835AT hook motif-containing protein, putative, expressed
LOC_Os12g35460Os.16539.1.S1_at1/1112+21523971..21534835AT hook motif-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7797.1.S1_at--1027--10171Chr12:21508696..21508720 (25 bp)
TATTATGGGTTTGCACGCTTCGTTG
LOC_Os12g35420
OsAffx.7797.1.S1_at--1135--4111Chr12:21508681..21508705 (25 bp)
CGCTTCGTTGGTGGCTGTCTATGGA
LOC_Os12g35420
OsAffx.7797.1.S1_at--692--8331Chr12:21508669..21508693 (25 bp)
GGCTGTCTATGGACCATCGGTGACT
LOC_Os12g35420
OsAffx.7797.1.S1_at--44--511Chr12:21508654..21508678 (25 bp)
ATCGGTGACTGCAGTGTGGGCCCTC
LOC_Os12g35420
OsAffx.7797.1.S1_at--1135--4271Chr12:21508636..21508657 (22 bp)
CCTCTCAGTTTTGGTCCACAAGCTA
LOC_Os12g35420
OsAffx.7797.1.S1_at--678--7911Chr12:21508575..21508599 (25 bp)
GGTTGGACAACCATCACGCATGTAC
LOC_Os12g35420
OsAffx.7797.1.S1_at--70--1011Chr12:21508550..21508574 (25 bp)
AGGATATGGGCATCGTCCTCTGCTT
LOC_Os12g35420
OsAffx.7797.1.S1_at--627--8591Chr12:21508523..21508547 (25 bp)
TGGTGCATGGGCTGCCATAGGACCT
LOC_Os12g35420
OsAffx.7797.1.S1_at--364--971Chr12:21508505..21508529 (25 bp)
AGGACCTCTTCCAATGACATGCGGG
LOC_Os12g35420
OsAffx.7797.1.S1_at--1075--3611Chr12:21508478..21508502 (25 bp)
CTTGTCTCACTTTGTACTACTGTCT
LOC_Os12g35420
OsAffx.7797.1.S1_at--625--7011Chr12:21508465..21508489 (25 bp)
GTACTACTGTCTCCATGGACTGGGA
LOC_Os12g35420
Target Sequence 
TATTATGGGTTTGCACGCTTCGTTGGTGGCTGTCTATGGACCATCGGTGACTGCAGTGTGGGCCCTCTCAGTTTTGGTCC
ACAAGCTAGGTTGGACAACCATCACGCATGTACAGGATATGGGCATCGTCCTCTGCTTGTTGGTGCATGGGCTGCCATAG
GACCTCTTCCAATGACATGCGGGCCCTTGTCTCACTTTGTACTACTGTCTCCATGGACTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis