Browse Element(s) Details


OsAffx.7850.1.S1_at

Description tigr:9640.m04018
TID=OsAffx.7850.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4107011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41040OsAffx.20066.1.S1_at11/1112+25358610..25369895transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g41040Os.47463.1.S1_x_at3/1112+25358610..25369895transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g41040Os.14491.2.S1_x_at2/1112+25358610..25369895transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g41050NANA12+25374216..25376181hypothetical protein
LOC_Os12g41060OsAffx.7849.1.S1_at11/1112+25381958..25385125AP2 domain containing protein, expressed
LOC_Os12g41070OsAffx.7850.1.S1_at11/1112+25387250..25387621hypothetical protein
LOC_Os12g41080NANA12+25400530..25404876retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g41090OsAffx.20067.1.S1_s_at11/1112+25411151..25412669Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7850.1.S1_at--1064--5351Chr12:25387327..25387351 (25 bp)
GAAGAGGGAGAGTAGCAGCGGAGGT
LOC_Os12g41070
OsAffx.7850.1.S1_at--692--7371Chr12:25387526..25387550 (25 bp)
GTGACGCTGATGGTCCCGATGAAGA
LOC_Os12g41070
OsAffx.7850.1.S1_at--408--8931Chr12:25387527..25387551 (25 bp)
TGACGCTGATGGTCCCGATGAAGAA
LOC_Os12g41070
OsAffx.7850.1.S1_at--411--4751Chr12:25387531..25387555 (25 bp)
GCTGATGGTCCCGATGAAGAAGGTA
LOC_Os12g41070
OsAffx.7850.1.S1_at--695--6251Chr12:25387534..25387558 (25 bp)
GATGGTCCCGATGAAGAAGGTAGCA
LOC_Os12g41070
OsAffx.7850.1.S1_at--363--7251Chr12:25387538..25387562 (25 bp)
GTCCCGATGAAGAAGGTAGCAGTGT
LOC_Os12g41070
OsAffx.7850.1.S1_at--803--4191Chr12:25387540..25387564 (25 bp)
CCCGATGAAGAAGGTAGCAGTGTCA
LOC_Os12g41070
OsAffx.7850.1.S1_at--132--5031Chr12:25387556..25387580 (25 bp)
GCAGTGTCAGCAGCACCATTGGTGG
LOC_Os12g41070
OsAffx.7850.1.S1_at--2--1111Chr12:25387558..25387582 (25 bp)
AGTGTCAGCAGCACCATTGGTGGCC
LOC_Os12g41070
OsAffx.7850.1.S1_at--566--7111Chr12:25387561..25387585 (25 bp)
GTCAGCAGCACCATTGGTGGCCTTG
LOC_Os12g41070
OsAffx.7850.1.S1_at--817--5051Chr12:25387565..25387589 (25 bp)
GCAGCACCATTGGTGGCCTTGTGGA
LOC_Os12g41070
Target Sequence 
GAAGAGGGAGAGTAGCAGCGGAGGTTGGAGAGGAGGGGGAGTAGCGATGGAGGTCGGGGTGACGCTGATGGTCCCGATGA
AGAAGGTAGCAGTGTCAGCAGCACCATTGGTGGCCTTGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis