Browse Element(s) Details


OsAffx.7851.1.S1_at

Description tigr:9640.m04023
TID=OsAffx.7851.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4112011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41090OsAffx.20067.1.S1_s_at11/1112+25411151..25412669Protein kinase domain containing protein, expressed
LOC_Os12g41100NANA12+25423105..25424464transposon protein, putative, unclassified
LOC_Os12g41110Os.9585.1.S1_s_at11/1112+25429011..25429896Calmodulin, putative, expressed
LOC_Os12g41110Os.9585.1.S1_at11/1112+25429011..25429896Calmodulin, putative, expressed
LOC_Os12g41120OsAffx.7851.1.S1_at11/1112+25432148..25432603hypothetical protein
LOC_Os12g41130OsAffx.1705.1.S1_at1/1112+25449767..25450808hypothetical protein
LOC_Os12g41130Os.27131.1.S1_at1/1112+25449767..25450808hypothetical protein
LOC_Os12g41140Os.7037.1.A1_s_at7/1112+25454030..25460115expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7851.1.S1_at--387--3371Chr12:25432183..25432207 (25 bp)
CACCATTGTCTACGCGCGTGGTCAA
LOC_Os12g41120
OsAffx.7851.1.S1_at--378--4671Chr12:25432198..25432222 (25 bp)
GCGTGGTCAATCTCCTTCATGTTGC
LOC_Os12g41120
OsAffx.7851.1.S1_at--697--3651Chr12:25432212..25432236 (25 bp)
CTTCATGTTGCCACCTAGATCTAGA
LOC_Os12g41120
OsAffx.7851.1.S1_at--260--6711Chr12:25432369..25432393 (25 bp)
GTTCGCGCATGAGGACGCCATCTGC
LOC_Os12g41120
OsAffx.7851.1.S1_at--1156--1811Chr12:25432383..25432407 (25 bp)
ACGCCATCTGCCATGTATCTATAGT
LOC_Os12g41120
OsAffx.7851.1.S1_at--181--451Chr12:25432399..25432423 (25 bp)
ATCTATAGTGGCTAGTTGCATCGTC
LOC_Os12g41120
OsAffx.7851.1.S1_at--348--10051Chr12:25432411..25432435 (25 bp)
TAGTTGCATCGTCAGGGTTTTCATC
LOC_Os12g41120
OsAffx.7851.1.S1_at--968--10531Chr12:25432430..25432454 (25 bp)
TTCATCATCGGCCTTGCTGAGGATA
LOC_Os12g41120
OsAffx.7851.1.S1_at--509--7951Chr12:25432450..25432474 (25 bp)
GGATATGTCGCTTCGTGGATCTACA
LOC_Os12g41120
OsAffx.7851.1.S1_at--843--1751Chr12:25432503..25432527 (25 bp)
ACCTCCGCCATGCTGTATGTACTTA
LOC_Os12g41120
OsAffx.7851.1.S1_at--78--3691Chr12:25432537..25432561 (25 bp)
CTATCCACCGCTAATAAGACATCGC
LOC_Os12g41120
Target Sequence 
CACCATTGTCTACGCGCGTGGTCAATCTCCTTCATGTTGCCACCTAGATCTAGAAAGAGGAAGAGCCGAGGGAATCAAGA
AGATGGTCGTGGCACGAAGTAGAGGGAGCCACATGAATGAAGAGGAGCAGATGAAGCAAAAGCCACAGTTGCCTTCCTCT
CTCCCCTCGACGTTGCGTCGGGCCCCGTTCGCGCATGAGGACGCCATCTGCCATGTATCTATAGTGGCTAGTTGCATCGT
CAGGGTTTTCATCATCGGCCTTGCTGAGGATATGTCGCTTCGTGGATCTACATCACTTCTCCTTCCGGCGGCTTCCTCCA
ACCTCCGCCATGCTGTATGTACTTACAACATATACTATCCACCGCTAATAAGACATCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis