Browse Element(s) Details


OsAffx.7866.1.S1_x_at

Description tigr:9640.m04173
TID=OsAffx.7866.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4248011/11hypothetical protein
LOC_Os08g304601/11hypothetical protein
LOC_Os10g304601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42430Os.47920.1.S1_at11/1112+26335640..26341045IQ calmodulin-binding motif family protein, expressed
LOC_Os12g42430Os.41841.1.S1_at1/1112+26335640..26341045IQ calmodulin-binding motif family protein, expressed
LOC_Os12g42440OsAffx.7864.1.S1_at11/1112+26344262..26346243DnaJ protein homolog 2, putative, expressed
LOC_Os12g42450NANA12+26348073..26350606retrotransposon protein, putative, unclassified
LOC_Os12g42460OsAffx.25357.1.S1_at1/1112+26351256..26353811hypothetical protein
LOC_Os12g42470OsAffx.32157.1.S1_at11/1112+26354035..26354659hypothetical protein
LOC_Os12g42480OsAffx.7866.1.S1_x_at11/1112+26358002..26358809hypothetical protein
LOC_Os12g42490OsAffx.20089.1.S1_at11/1112+26365472..26367097hypothetical protein
LOC_Os12g42500NANA12+26372110..26372953retrotransposon protein, putative, unclassified
LOC_Os12g42510OsAffx.32158.1.S1_x_at11/1112+26380372..26381214hypothetical protein
LOC_Os12g42510OsAffx.32158.1.S1_at11/1112+26380372..26381214hypothetical protein
LOC_Os12g42520OsAffx.32159.1.S1_at11/1112+26382328..26385998Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7866.1.S1_x_at--496--2891Chr12:26358050..26358074 (25 bp)
AAGGTGATTGATGGGTTCGACGAGC
LOC_Os12g42480
OsAffx.7866.1.S1_x_at--353--7411Chr12:26358053..26358077 (25 bp)
GTGATTGATGGGTTCGACGAGCGCG
LOC_Os12g42480
OsAffx.7866.1.S1_x_at--1051--3711Chr12:26358084..26358108 (25 bp)
CCGGGAACCATGAGGAAGGGCAACT
LOC_Os12g42480
OsAffx.7866.1.S1_x_at--1102--2871Chr12:26358099..26358123 (25 bp)
AAGGGCAACTGGAGGCAACAAGCAC
LOC_Os12g42480
OsAffx.7866.1.S1_x_at--1021--2553Chr12:26358105..26358129 (25 bp)
AACTGGAGGCAACAAGCACGGCGAC
LOC_Os12g42480
OsAffx.7866.1.S1_x_at--500--931Chr12:26358186..26358210 (25 bp)
AGGCAACCAAGGGAATCCTCGTCCT
LOC_Os12g42480
OsAffx.7866.1.S1_x_at--107--1711Chr12:26358191..26358215 (25 bp)
ACCAAGGGAATCCTCGTCCTTGCAG
LOC_Os12g42480
OsAffx.7866.1.S1_x_at--1159--3011Chr12:26358531..26358555 (25 bp)
AATCCGTCGGTGGAAACGGCGCAGC
LOC_Os12g42480
OsAffx.7866.1.S1_x_at--1095--8051Chr12:26358683..26358707 (25 bp)
GGAGAACAGAGTGGGTGCCGAGGTA
LOC_Os12g42480
OsAffx.7866.1.S1_x_at--364--8631Chr12:26358694..26358718 (25 bp)
TGGGTGCCGAGGTAGGGCTTGGCTC
LOC_Os12g42480
OsAffx.7866.1.S1_x_at--233--8292Chr12:26358709..26358733 (25 bp)
GGCTTGGCTCGGTGATGCCGAAGAT
LOC_Os12g42480
Target Sequence 
AAGGTGATTGATGGGTTCGACGAGCGCGGGGTGGCCGGGAACCATGAGGAAGGGCAACTGGAGGCAACAAGCACGGCGAC
GGAGCTCACCTCGCGCGGGGCAGATGGCGTTCCGGCGGGGGATGGCGATGGTGAGGAGGCAACCAAGGGAATCCTCGTCC
TTGCAGAGCCGAAGGAGGCGACGGCGCATCGCGAGGTGGTCTGGGACGGCAGCAGGAGGCGGCAAATGCGGCGGCGGCCT
CAGGCCGGGGTGGAGCTTGATGCGGCGAATCCGTCGGTGGAAACGGCGCAGCACGGCGGCGACGGGAACGGCGGTGGTGG
GCGGCTGAATGACGCCAGCGAGCGGCGGAGGTTGGTGGCGCGGTGGGGCGGCTTTCCGGTGGCTATTGGGGAAAATGGAG
CAGCTGCCGGGGTGGAAGGGGAGAACAGAGTGGGTGCCGAGGTAGGGCTTGGCTCGGTGATGCCGAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7866.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis