Browse Element(s) Details


OsAffx.20089.1.S1_at

Description tigr:9640.m04174
TID=OsAffx.20089.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4249011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42430Os.47920.1.S1_at11/1112+26335640..26341045IQ calmodulin-binding motif family protein, expressed
LOC_Os12g42430Os.41841.1.S1_at1/1112+26335640..26341045IQ calmodulin-binding motif family protein, expressed
LOC_Os12g42440OsAffx.7864.1.S1_at11/1112+26344262..26346243DnaJ protein homolog 2, putative, expressed
LOC_Os12g42450NANA12+26348073..26350606retrotransposon protein, putative, unclassified
LOC_Os12g42460OsAffx.25357.1.S1_at1/1112+26351256..26353811hypothetical protein
LOC_Os12g42470OsAffx.32157.1.S1_at11/1112+26354035..26354659hypothetical protein
LOC_Os12g42480OsAffx.7866.1.S1_x_at11/1112+26358002..26358809hypothetical protein
LOC_Os12g42490OsAffx.20089.1.S1_at11/1112+26365472..26367097hypothetical protein
LOC_Os12g42500NANA12+26372110..26372953retrotransposon protein, putative, unclassified
LOC_Os12g42510OsAffx.32158.1.S1_x_at11/1112+26380372..26381214hypothetical protein
LOC_Os12g42510OsAffx.32158.1.S1_at11/1112+26380372..26381214hypothetical protein
LOC_Os12g42520OsAffx.32159.1.S1_at11/1112+26382328..26385998Leucine Rich Repeat family protein
LOC_Os12g42530OsAffx.7867.1.S1_at11/1112+26387110..26388414hypothetical protein
LOC_Os12g42540NANA12+26391264..26391518RING-H2 finger protein ATL2I, putative
LOC_Os12g42550Os.11845.1.S1_a_at11/1112+26391717..26396477Methyl-CpG binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20089.1.S1_at--526--4131Chr12:26366461..26366485 (25 bp)
CGCTGATCACGGCAATGACCAATTT
LOC_Os12g42490
OsAffx.20089.1.S1_at--998--3111Chr12:26366481..26366505 (25 bp)
AATTTGTTCAACTGTTGCGCCCAGT
LOC_Os12g42490
OsAffx.20089.1.S1_at--274--10711Chr12:26366495..26366519 (25 bp)
TTGCGCCCAGTGACGGCTGTCTATT
LOC_Os12g42490
OsAffx.20089.1.S1_at--559--5431Chr12:26366580..26366604 (25 bp)
GAACCATGTATTTCAAACCAGCTGT
LOC_Os12g42490
OsAffx.20089.1.S1_at--1121--1571Chr12:26366620..26366644 (25 bp)
AGCTCAGATTACTTGTGGTGTCAAC
LOC_Os12g42490
OsAffx.20089.1.S1_at--274--7651Chr12:26366733..26366757 (25 bp)
GGGAGGATAACAGCTTGCACCAGCA
LOC_Os12g42490
OsAffx.20089.1.S1_at--207--1551Chr12:26366769..26366793 (25 bp)
AGCATTTTGCTTCATGACAGCGGAT
LOC_Os12g42490
OsAffx.20089.1.S1_at--468--6231Chr12:26366816..26366840 (25 bp)
GATGGCTGCTGATCGCGGCAATGAT
LOC_Os12g42490
OsAffx.20089.1.S1_at--1045--3111Chr12:26366842..26366866 (25 bp)
AATTTGCTTGTGTTCGACGGCTGCG
LOC_Os12g42490
OsAffx.20089.1.S1_at--2--4191Chr12:26366867..26366891 (25 bp)
CCCAGTGATGGCTGTCTGTTTGCAG
LOC_Os12g42490
OsAffx.20089.1.S1_at--843--6291Chr12:26366897..26366921 (25 bp)
GATGATGGTAACTGTTCTTGCTCAA
LOC_Os12g42490
Target Sequence 
CGCTGATCACGGCAATGACCAATTTGTTCAACTGTTGCGCCCAGTGACGGCTGTCTATTTGCATGAGACGCTGATAGTAA
CTATTCTTGCTCAAGTTGATGGAACTAAATACAACAGACGAACCATGTATTTCAAACCAGCTGTTAACGGTGAAGGGGAA
GCTCAGATTACTTGTGGTGTCAACAGCTTGCTTGTGAAGGGACATTTCTATGGGAGGATAACAGCTTGCACCAGCACGGT
CAATGACAGCATTTTGCTTCATGACAGCGGATTAGTTCCAGTTGGTGGTGGTGTGATGGCTGCTGATCGCGGCAATGATC
AATTTGCTTGTGTTCGACGGCTGCGCCCAGTGATGGCTGTCTGTTTGCAGGAGACGATGATGGTAACTGTTCTTGCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis