Browse Element(s) Details


Os.11845.1.S1_a_at

Description gb:AK072503.1
DB_XREF= gi:32982526
TID=Os.11845.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11845 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023146E17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023126H05, full insert sequence.
FL= gb:AK063843.1 gb:AK059006.1 gb:AK072503.1 gb:AK072934.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4255011/11Methyl-CpG binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42490OsAffx.20089.1.S1_at11/1112+26365472..26367097hypothetical protein
LOC_Os12g42500NANA12+26372110..26372953retrotransposon protein, putative, unclassified
LOC_Os12g42510OsAffx.32158.1.S1_x_at11/1112+26380372..26381214hypothetical protein
LOC_Os12g42510OsAffx.32158.1.S1_at11/1112+26380372..26381214hypothetical protein
LOC_Os12g42520OsAffx.32159.1.S1_at11/1112+26382328..26385998Leucine Rich Repeat family protein
LOC_Os12g42530OsAffx.7867.1.S1_at11/1112+26387110..26388414hypothetical protein
LOC_Os12g42540NANA12+26391264..26391518RING-H2 finger protein ATL2I, putative
LOC_Os12g42550Os.11845.1.S1_a_at11/1112+26391717..26396477Methyl-CpG binding domain containing protein, expressed
LOC_Os12g42560OsAffx.7869.1.S1_at10/1112+26396592..26398755hypothetical protein
LOC_Os12g42570Os.4813.1.S1_at11/1112+26399748..26404391expressed protein
LOC_Os12g42580NANA12+26415446..26415991transposon protein, putative, unclassified, expressed
LOC_Os12g42590OsAffx.20091.1.S1_at8/1112+26418379..26420581hypothetical protein
LOC_Os12g42600OsAffx.32160.1.S1_at11/1112+26421369..26427732Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os12g42600Os.24076.1.S1_at1/1112+26421369..26427732Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0008327molecular_functionmethyl-CpG binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11845.1.S1_a_at--134--8031Chr12:26392358..26392382 (25 bp)
GGAGTCATCCCCTGTCAACAACGGG
LOC_Os12g42550
Os.11845.1.S1_a_at--746--3771Chr12:26392316..26392340 (25 bp)
CTCTGCCGTGAAGTGCACCTGAAGA
LOC_Os12g42550
Os.11845.1.S1_a_at--298--4311Chr12:26392253..26392277 (25 bp)
CCTTGTCCGTGATGTACGCCTTTTA
LOC_Os12g42550
Os.11845.1.S1_a_at--158--6991Chr12:26392240..26392264 (25 bp)
GTACGCCTTTTAGGAATCATTCGCA
LOC_Os12g42550
Os.11845.1.S1_a_at--447--5251Chr12:26392227..26392251 (25 bp)
GAATCATTCGCATTTGCATTGTGTA
LOC_Os12g42550
Os.11845.1.S1_a_at--1041--4931Chr12:26392212..26392236 (25 bp)
GCATTGTGTAATCAAATCGACCAAG
LOC_Os12g42550
Os.11845.1.S1_a_at--1147--4251Chr12:26392164..26392188 (25 bp)
CCGGTTATTAGGCTCTGCATCAGTT
LOC_Os12g42550
Os.11845.1.S1_a_at--266--4811Chr12:26392153..26392177 (25 bp)
GCTCTGCATCAGTTTAGCTTGCTTG
LOC_Os12g42550
Os.11845.1.S1_a_at--926--9951Chr12:26392075..26392099 (25 bp)
TACCCTACCCATCATGCTCATAATA
LOC_Os12g42550
Os.11845.1.S1_a_at--1093--10411Chr12:26392046..26392070 (25 bp)
TTATCATGCCTAACTTGCTGTAAGC
LOC_Os12g42550
Os.11845.1.S1_a_at--1029--151Chr12:26391876..26391900 (25 bp)
ATTATCCATCAACCCATCAGGCAGG
LOC_Os12g42550
Target Sequence 
GGAGTCATCCCCTGTCAACAACGGGCAGCTGCCGGCTGGTGCCTCTGCCGTGAAGTGCACCTGAAGATGAAGATGAAACC
CCCCAACGAATCATCATCCTCCTCCCCTTGTCCGTGATGTACGCCTTTTAGGAATCATTCGCATTTGCATTGTGTAATCA
AATCGACCAAGGAACTGACGTTGNTGGGTGACANCCGGTTATTAGGCTCTGCATCAGTTTAGCTTGCTTGTATGTATGGT
ATGATTGTGGTGTGGCNCAGCAACATACATACATACATACGTGTACCCTACCCATCATGCTCATAATATCTNTTATCATG
CCTAACTTGCTGTAAGCACATTAATCTTAGGACATATATACCGTCGTNTGTCCGTCCGTCNGTNNGTGTTTGTNCCTGTG
CTGTATTATGTGTAATGACTTGATTAGCTATNTATGAATAAGGTTGGATGTGGANGNGCATCCTCTTNTCCATCCATTTA
AGATTATCCATCAACCCATCAGGCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11845.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis