Browse Element(s) Details


OsAffx.20091.1.S1_at

Description tigr:9640.m04184
TID=OsAffx.20091.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g425908/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42550Os.11845.1.S1_a_at11/1112+26391717..26396477Methyl-CpG binding domain containing protein, expressed
LOC_Os12g42560OsAffx.7869.1.S1_at10/1112+26396592..26398755hypothetical protein
LOC_Os12g42570Os.4813.1.S1_at11/1112+26399748..26404391expressed protein
LOC_Os12g42580NANA12+26415446..26415991transposon protein, putative, unclassified, expressed
LOC_Os12g42590OsAffx.20091.1.S1_at8/1112+26418379..26420581hypothetical protein
LOC_Os12g42600OsAffx.32160.1.S1_at11/1112+26421369..26427732Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os12g42600Os.24076.1.S1_at1/1112+26421369..26427732Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os12g42610Os.9501.1.S1_at11/1112+26444032..26453716YABBY protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20091.1.S1_at--413--7132Chr12:26418415..26418439 (25 bp)
GTCATCATCGTCCAAAGCACCATCA
LOC_Os12g42590
OsAffx.20091.1.S1_at--1128--1491NONE
AGCACCATCAGCGACCAGGGAGTAA
NONE
OsAffx.20091.1.S1_at--805--3551NONE
CATCAGCGACCAGGGAGTAATATTT
NONE
OsAffx.20091.1.S1_at--813--10193Chr12:26419070..26419094 (25 bp)
TATTTGGTGAATATGTCAGCGAGTT
LOC_Os12g42590
OsAffx.20091.1.S1_at--613--8733Chr12:26419083..26419107 (25 bp)
TGTCAGCGAGTTTTCTTGCAGCAAT
LOC_Os12g42590
OsAffx.20091.1.S1_at--200--1491Chr12:26419102..26419126 (25 bp)
AGCAATGGAACTTTCCTGCAGCCAC
LOC_Os12g42590
OsAffx.20091.1.S1_at--331--2531Chr12:26419110..26419134 (25 bp)
AACTTTCCTGCAGCCACCTTTATGT
LOC_Os12g42590
OsAffx.20091.1.S1_at--790--9031Chr12:26419118..26419142 (25 bp)
TGCAGCCACCTTTATGTGCTTCTGT
LOC_Os12g42590
OsAffx.20091.1.S1_at--1015--10111NONE
TATGTGCTTCTGTTTGGAGATTAGC
NONE
OsAffx.20091.1.S1_at--719--6052Chr12:26419864..26419887 (24 bp)
GAGATTAGCATTGTTTGCAGGGTGT
LOC_Os12g42590
OsAffx.20091.1.S1_at--950--9032Chr12:26419878..26419902 (25 bp)
TGCAGGGTGTTTCAACGACACTACT
LOC_Os12g42590
Target Sequence 
GTCATCATCGTCCAAAGCACCATCAGCGACCAGGGAGTAATATTTGGTGAATATGTCAGCGAGTTTTCTTGCAGCAATGG
AACTTTCCTGCAGCCACCTTTATGTGCTTCTGTTTGGAGATTAGCATTGTTTGCAGGGTGTTTCAACGACACTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20091.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis