Browse Element(s) Details


Os.24076.1.S1_at

Description gb:CB618689
DB_XREF= gi:29613676
DB_XREF=OSIIEa02M11.f
CLONE=OSIIEa02M11
TID=Os.24076.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24076 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_188065.1 (A.thaliana) disease resistance protein, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g426001/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42550Os.11845.1.S1_a_at11/1112+26391717..26396477Methyl-CpG binding domain containing protein, expressed
LOC_Os12g42560OsAffx.7869.1.S1_at10/1112+26396592..26398755hypothetical protein
LOC_Os12g42570Os.4813.1.S1_at11/1112+26399748..26404391expressed protein
LOC_Os12g42580NANA12+26415446..26415991transposon protein, putative, unclassified, expressed
LOC_Os12g42590OsAffx.20091.1.S1_at8/1112+26418379..26420581hypothetical protein
LOC_Os12g42600OsAffx.32160.1.S1_at11/1112+26421369..26427732Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os12g42600Os.24076.1.S1_at1/1112+26421369..26427732Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os12g42610Os.9501.1.S1_at11/1112+26444032..26453716YABBY protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24076.1.S1_at--345--6931NONE
GTAGGGACTCCTTCAAGAACACCAT
NONE
Os.24076.1.S1_at--784--931NONE
AGGCAACCGCTCAGTGGCTGCAGCA
NONE
Os.24076.1.S1_at--353--8131Chr07:20153642..20153666 (25 bp)
GGACTTCTTGACGACATGGAATCTG
NONE
Os.24076.1.S1_at--3--5571NONE
GAAAGCTCCTGATTCTTCAAACTCT
NONE
Os.24076.1.S1_at--135--6291NONE
GATGTTATGACTTGGCTCTCTGAAA
NONE
Os.24076.1.S1_at--648--7051NONE
GTAACTTGCCAGTGTATGTTCTCAA
NONE
Os.24076.1.S1_at--507--171Chr12:26424820..26424869 (24 bp)
ATTTTTGAGACACACACCCTGAATG
LOC_Os12g42600
Os.24076.1.S1_at--453--1811NONE
ACCCTGAATGAGAGTGCCTTGCAAG
NONE
Os.24076.1.S1_at--961--351NONE
ATAAGATCTGTTTATCCCCTGTTGC
NONE
Os.24076.1.S1_at--871--6311NONE
GATGACTTTCTTATTGGCCGTGATG
NONE
Os.24076.1.S1_at--1103--5651NONE
GACATGATACTGGACAATGCCCGAT
NONE
Target Sequence 
GTAGGGACTCCTTCAAGAACACCATCAAGAAGATGGATGTGGTGGAGGACGCGCTTCTTTTCCTCCACCGAAACAATNTG
CAGCGGGTCAAGCCTGACAAAGAGGAGGCAACCGCTCAGTGGCTGCAGCATCTGAAGAAAGCTGCACACGATGCAAAAGG
ACTTCTTGACGACATGGAATCTGAGGTGAAAGCTCCTGATTCTTCAAACTCTGATGTTATGACTTGGCTCTCTGAAAATG
CTAACATGATTAGAGTGACATACATCATCAGTAACTTGCCAGTGTATGTTCTCAAGGCAAAACTATTTTTGAGACACACA
CCCTGAATGAGAGTGCCTTGCAAGATGAGAAGAAAGATAAGATCTGTTTATCCCCTGTTGCTATGNCCGGCCAAAANAAA
NANNNNNNNGATGATGACTTTCTTATTGGCCGTGATGAAGAAGTAGCTATGATAAGGGACATGATACTGGACAATGCCCG
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis