Browse Element(s) Details


OsAffx.7867.1.S1_at

Description tigr:9640.m04178
TID=OsAffx.7867.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4253011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42490OsAffx.20089.1.S1_at11/1112+26365472..26367097hypothetical protein
LOC_Os12g42500NANA12+26372110..26372953retrotransposon protein, putative, unclassified
LOC_Os12g42510OsAffx.32158.1.S1_x_at11/1112+26380372..26381214hypothetical protein
LOC_Os12g42510OsAffx.32158.1.S1_at11/1112+26380372..26381214hypothetical protein
LOC_Os12g42520OsAffx.32159.1.S1_at11/1112+26382328..26385998Leucine Rich Repeat family protein
LOC_Os12g42530OsAffx.7867.1.S1_at11/1112+26387110..26388414hypothetical protein
LOC_Os12g42540NANA12+26391264..26391518RING-H2 finger protein ATL2I, putative
LOC_Os12g42550Os.11845.1.S1_a_at11/1112+26391717..26396477Methyl-CpG binding domain containing protein, expressed
LOC_Os12g42560OsAffx.7869.1.S1_at10/1112+26396592..26398755hypothetical protein
LOC_Os12g42570Os.4813.1.S1_at11/1112+26399748..26404391expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7867.1.S1_at--1058--611Chr12:26387140..26387164 (25 bp)
ATGCTGGCCTGCTCCAACCGCCGGC
LOC_Os12g42530
OsAffx.7867.1.S1_at--330--7831Chr12:26387180..26387204 (25 bp)
GGTCACCGTCGCAGCGGAGCATCGA
LOC_Os12g42530
OsAffx.7867.1.S1_at--309--7111Chr12:26387181..26387205 (25 bp)
GTCACCGTCGCAGCGGAGCATCGAC
LOC_Os12g42530
OsAffx.7867.1.S1_at--784--8111Chr12:26387235..26387259 (25 bp)
GGACGAGGCCGTCCTGGCGGAGTAC
LOC_Os12g42530
OsAffx.7867.1.S1_at--898--9271Chr12:26387246..26387270 (25 bp)
TCCTGGCGGAGTACCCGACGACGGT
LOC_Os12g42530
OsAffx.7867.1.S1_at--517--4671Chr12:26387251..26387275 (25 bp)
GCGGAGTACCCGACGACGGTGTACA
LOC_Os12g42530
OsAffx.7867.1.S1_at--144--8031Chr12:26387253..26387277 (25 bp)
GGAGTACCCGACGACGGTGTACAGC
LOC_Os12g42530
OsAffx.7867.1.S1_at--81--6091Chr12:26387254..26387278 (25 bp)
GAGTACCCGACGACGGTGTACAGCT
LOC_Os12g42530
OsAffx.7867.1.S1_at--412--1171Chr12:26387255..26387279 (25 bp)
AGTACCCGACGACGGTGTACAGCTG
LOC_Os12g42530
OsAffx.7867.1.S1_at--984--1851Chr12:26387263..26387287 (25 bp)
ACGACGGTGTACAGCTGCTCGTCGT
LOC_Os12g42530
OsAffx.7867.1.S1_at--531--4091Chr12:26387264..26387288 (25 bp)
CGACGGTGTACAGCTGCTCGTCGTC
LOC_Os12g42530
Target Sequence 
ATGCTGGCCTGCTCCAACCGCCGGCGACGGCGGCGGCGGCGGTCACCGTCGCAGCGGAGCATCGACGACGTGGAGCTCGG
CCGGGCGGCGGGGCTGGACGAGGCCGTCCTGGCGGAGTACCCGACGACGGTGTACAGCTGCTCGTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7867.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis