Browse Element(s) Details


OsAffx.7881.1.S1_at

Description tigr:9640.m04290
TID=OsAffx.7881.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4357011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43550Os.11076.1.S1_at11/1112+26988371..26991602Ras-related protein RHN1, putative, expressed
LOC_Os12g43560Os.19944.1.S1_at10/1112+26991714..26996384zinc finger family protein, putative, expressed
LOC_Os12g43564NANA12+26999080..27001360hypothetical protein
LOC_Os12g43570OsAffx.7881.1.S1_at11/1112+27007832..27008575hypothetical protein
LOC_Os12g43580OsAffx.32172.1.S1_s_at11/1112+27012714..27016001expressed protein
LOC_Os12g43590Os.32636.1.S1_s_at11/1112+27018375..27023368amine oxidase, putative, expressed
LOC_Os12g43590Os.11938.1.S1_at7/1112+27018375..27023368amine oxidase, putative, expressed
LOC_Os12g43600Os.28425.1.S1_x_at11/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43600Os.46902.1.S1_x_at6/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43600Os.46902.1.S1_at3/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43600Os.47039.1.S1_x_at3/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7881.1.S1_at--1130--691Chr12:27008049..27008073 (25 bp)
ATGAGGATGACGACCCGTCGGCCTT
LOC_Os12g43570
OsAffx.7881.1.S1_at--1145--7971Chr12:27008053..27008077 (25 bp)
GGATGACGACCCGTCGGCCTTGCTG
LOC_Os12g43570
OsAffx.7881.1.S1_at--201--8111Chr12:27008149..27008173 (25 bp)
GGACGACGAGATCAGGCGGGCGCGC
LOC_Os12g43570
OsAffx.7881.1.S1_at--373--8091Chr12:27008185..27008209 (25 bp)
GGAGCGCCTCCGGTGCGCGTGGGCG
LOC_Os12g43570
OsAffx.7881.1.S1_at--970--7451Chr12:27008210..27008234 (25 bp)
GTGTCGCGGGCGTGGCAGAGCATCG
LOC_Os12g43570
OsAffx.7881.1.S1_at--756--2931Chr12:27008255..27008279 (25 bp)
AAGGCCGCGTTGCAGGGCGAGAACG
LOC_Os12g43570
OsAffx.7881.1.S1_at--601--9371Chr12:27008298..27008322 (25 bp)
TCGACCATGTGCTCCGGGCGAAGCC
LOC_Os12g43570
OsAffx.7881.1.S1_at--923--7251Chr12:27008353..27008377 (25 bp)
GTCCTGCTGCTACGGTGACAACTTC
LOC_Os12g43570
OsAffx.7881.1.S1_at--869--4751Chr12:27008358..27008382 (25 bp)
GCTGCTACGGTGACAACTTCACCGA
LOC_Os12g43570
OsAffx.7881.1.S1_at--67--6151Chr12:27008437..27008461 (25 bp)
GAGGTGCTTCGGGTGCGGCGAGAGA
LOC_Os12g43570
OsAffx.7881.1.S1_at--137--7711Chr12:27008447..27008471 (25 bp)
GGGTGCGGCGAGAGAGCGTGCTGCT
LOC_Os12g43570
Target Sequence 
ATGAGGATGACGACCCGTCGGCCTTGCTGCGGCGGCGGGCGAGGTGGAAGCAGGGGCTGGAGGCGGTGAAGACGGCCGTG
GCGTGGCGTCTGGCGGCGAAGGACGACGAGATCAGGCGGGCGCGCCGGGAGATGGCGGAGCGCCTCCGGTGCGCGTGGGC
GGTGTCGCGGGCGTGGCAGAGCATCGCCGTGGCGCGGGAGGGGGAGAAGGCCGCGTTGCAGGGCGAGAACGCCGCGCTGC
GCGTCGAGCTCGACCATGTGCTCCGGGCGAAGCCGCGGTGGCACCACGACGACGACGACGCCGAGTCCTGCTGCTACGGT
GACAACTTCACCGACGACACCGGCGGCAAGGAGGAGGACGAGGGCGGCGGCGACGCGAGCACGGCGGCGAGGTGCTTCGG
GTGCGGCGAGAGAGCGTGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7881.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis