Browse Element(s) Details


OsAffx.8033.1.S1_at

Description tigr:9638.m02883
TID=OsAffx.8033.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative disease resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3306011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33030OsAffx.617.1.A1_at11/1110+16968971..16970268hypothetical protein
LOC_Os10g33030OsAffx.617.1.A1_x_at11/1110+16968971..16970268hypothetical protein
LOC_Os10g33040Os.46800.1.S1_a_at11/1110+16982871..16987487Leucine Rich Repeat family protein, expressed
LOC_Os10g33040Os.46800.1.S2_a_at11/1110+16982871..16987487Leucine Rich Repeat family protein, expressed
LOC_Os10g33050Os.56974.1.S1_at11/1110+16987465..16988532expressed protein
LOC_Os10g33060OsAffx.8033.1.S1_at11/1110+16990871..16992849Leucine Rich Repeat family protein
LOC_Os10g33070OsAffx.6844.1.S1_at11/1110+16995679..16996293hypothetical protein
LOC_Os10g33080OsAffx.20258.1.S1_at10/1110+17002072..17005527Leucine Rich Repeat family protein
LOC_Os10g33110Os.46543.2.S1_at5/1110+17017221..17020331Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8033.1.S1_at--927--9611Chr10:16991389..16991413 (25 bp)
TCAGGGAATTCCTCCAATTGCAGCT
LOC_Os10g33060
OsAffx.8033.1.S1_at--346--3171Chr10:16991374..16991398 (25 bp)
AATTGCAGCTCTGGCTCAGCATTCT
LOC_Os10g33060
OsAffx.8033.1.S1_at--665--2271Chr10:16991223..16991247 (25 bp)
AAATCTCTGCACTCGGGACAAGCTA
LOC_Os10g33060
OsAffx.8033.1.S1_at--757--2231Chr10:16991199..16991223 (25 bp)
ACAATTGTTCTCTTCATTCGGTATA
LOC_Os10g33060
OsAffx.8033.1.S1_at--837--9591Chr10:16991186..16991210 (25 bp)
TCATTCGGTATATCTTGCTGGCAAC
LOC_Os10g33060
OsAffx.8033.1.S1_at--364--9131Chr10:16991171..16991195 (25 bp)
TGCTGGCAACGGTTTCACTGGAGTT
LOC_Os10g33060
OsAffx.8033.1.S1_at--775--5631Chr10:16991120..16991144 (25 bp)
GACACTGGTCTCCTTAGATTTTGGG
LOC_Os10g33060
OsAffx.8033.1.S1_at--842--9571Chr10:16991085..16991109 (25 bp)
TCTTCGGTAATATTCCTCCTTGGAT
LOC_Os10g33060
OsAffx.8033.1.S1_at--1059--10671Chr10:16990998..16991022 (25 bp)
TTCCTTCGGAGTTGTCGCAGCTTTC
LOC_Os10g33060
OsAffx.8033.1.S1_at--152--811Chr10:16990944..16990968 (25 bp)
ATGGTCTGACAGGATCGATTCCCAG
LOC_Os10g33060
OsAffx.8033.1.S1_at--428--6271Chr10:16990920..16990944 (25 bp)
GATCTTTTAGTAACCTCACTTCCAT
LOC_Os10g33060
Target Sequence 
TCAGGGAATTCCTCCAATTGCAGCTCTGGCTCAGCATTCTGCAGGCTGCTCTCCCTCGAGAATCTAGACCTTTCAAACAA
CAAGCTCACTGGTAAGCTGCCCGACTGCTGGTGGAACCTGCAGAATCTGCAGTTCATGGACCTCTCCCACAACGACTTCT
CAGGTGAAATCTCTGCACTCGGGACAAGCTACAATTGTTCTCTTCATTCGGTATATCTTGCTGGCAACGGTTTCACTGGA
GTTTTTCCATCAACTTTAGAGGGATGTAAGACACTGGTCTCCTTAGATTTTGGGAATAACAAGTTCTTCGGTAATATTCC
TCCTTGGATTGGGAAAGGATTTCCTTCGATGAGGATTCTTATCCTTAAATCAAACAACTTCACTGGTGAAATTCCTTCGG
AGTTGTCGCAGCTTTCTCAACTTCAACTACTAGACATGAGCAACAATGGTCTGACAGGATCGATTCCCAGATCTTTTAGT
AACCTCACTTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis