Browse Element(s) Details


OsAffx.8272.1.S1_at

Description gb:NM_195821.1
DB_XREF= gi:37533001
TID=OsAffx.8272.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0015I18.25), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1906411/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g109001/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g519601/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19020NANA10+9353217..9356549transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19030OsAffx.6699.1.S1_at11/1110+9359671..9360007hypothetical protein
LOC_Os10g19030OsAffx.6699.1.S1_x_at11/1110+9359671..9360007hypothetical protein
LOC_Os10g19040OsAffx.20506.1.S1_at11/1110+9365364..9366134hypothetical protein
LOC_Os10g19050NANA10+9368690..9370940hypothetical protein
LOC_Os10g19064OsAffx.8272.1.S1_at11/1110+9381377..9384396retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19064OsAffx.8980.1.S1_at1/1110+9381377..9384396retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19080Os.2987.3.S1_x_at6/1110+9385243..9387918retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19090OsAffx.6700.1.S1_at11/1110+9392508..9392864hypothetical protein
LOC_Os10g19100OsAffx.18296.1.S1_at10/1110+9393041..9395481hypothetical protein
LOC_Os10g19110OsAffx.18297.1.S1_at11/1110+9396632..9398816Cytochrome P450, putative
LOC_Os10g19120NANA10+9402171..9405080retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g19130NANA10+9405396..9411506retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8272.1.S1_at--558--27722Chr11:20164211..20164722 (25 bp)
AAGACCTCGTAGGAGCTATTTCATG
NONE
OsAffx.8272.1.S1_at--63--8152Chr10:9388113..9388135 (23 bp)
GGACAACTACACAAGGAACGAGGCG
NONE
OsAffx.8272.1.S1_at--97--5451Chr10:9381566..9381585 (20 bp)
GAACGAGGCGAGACCTGACTTCCTG
LOC_Os10g19064
OsAffx.8272.1.S1_at--1044--5991Chr10:9381557..9381581 (25 bp)
GAGACCTGACTTCCTGACAAGAACA
LOC_Os10g19064
OsAffx.8272.1.S1_at--136--751Chr10:9381533..9381557 (25 bp)
ATGTCCCTACTACTCAGGTTTAGTT
LOC_Os10g19064
OsAffx.8272.1.S1_at--716--1011Chr10:9381518..9381542 (25 bp)
AGGTTTAGTTGCTCTGTCTGACCAG
LOC_Os10g19064
OsAffx.8272.1.S1_at--1019--8711Chr10:9381504..9381528 (25 bp)
TGTCTGACCAGCAGAGCTTCTTCTG
LOC_Os10g19064
OsAffx.8272.1.S1_at--392--3411Chr10:9381496..9381520 (25 bp)
CAGCAGAGCTTCTTCTGGATTTTGC
LOC_Os10g19064
OsAffx.8272.1.S1_at--831--7931Chr10:9381480..9381504 (25 bp)
GGATTTTGCAGAGACCGATCCAATC
LOC_Os10g19064
OsAffx.8272.1.S1_at--908--1351Chr10:9381471..9381495 (25 bp)
AGAGACCGATCCAATCTGCTGTGGC
LOC_Os10g19064
OsAffx.8272.1.S1_at--26--4391Chr10:9381461..9381485 (25 bp)
CCAATCTGCTGTGGCGCCGGGAAAA
LOC_Os10g19064
Target Sequence 
AAGACCTCGTAGGAGCTATTTCATGGAAAAGCTCAAAACAGACTACCACTGCAGGGTCTACCATGTATGCCGAGTTTATA
GCATGCCATGAGGCTACGGGGCAGGTGAACTGGCTAATGAAGTTCATACCCGGTTTTAAAGAAAAAGCTAAAGGAAATAG
TGAGATCAAGGGGGAGAATGTTAGATGGATCTCCCTCCCCTTGAGCCCAACGGCTCAAGGGGGCCTTGACCCGCGCCCTG
ATCGGGGGCGCCCAGCCCAATGGCTGGTGGGCCCCCGTCACACTGTGCCATATAAAGAGGGGTGGAGGACGGGACGGGAC
AACTACACAAGGAACGAGGCGAGACCTGACTTCCTGACAAGAACATGTCCCTACTACTCAGGTTTAGTTGCTCTGTCTGA
CCAGCAGAGCTTCTTCTGGATTTTGCAGAGACCGATCCAATCTGCTGTGGCGCCGGGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis