Browse Element(s) Details


OsAffx.8414.1.S1_at

Description gb:NM_195203.1
DB_XREF= gi:37531765
TID=OsAffx.8414.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative non-LTR retroelement reverse transcriptase (OSJNAb0022I16.17), mRNA.
PROD=putative non-LTR retroelement reversetranscriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1049011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10460Os.27691.1.S1_x_at1/1110+5512179..5517934retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10460OsAffx.19532.1.S1_at1/1110+5512179..5517934retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10480Os.46714.1.S1_at11/1110+5525792..5533426expressed protein
LOC_Os10g10480Os.16112.1.S1_s_at1/1110+5525792..5533426expressed protein
LOC_Os10g10490OsAffx.8414.1.S1_at11/1110+5537020..5538433retrotransposon protein, putative, unclassified
LOC_Os10g10500Os.28056.1.S1_at11/1110+5546932..5555416V-type ATPase 116kDa subunit family protein, expressed
LOC_Os10g10500Os.49542.1.S1_at1/1110+5546932..5555416V-type ATPase 116kDa subunit family protein, expressed
LOC_Os10g10510OsAffx.18204.1.S1_at11/1110+5560629..5561988hypothetical protein
LOC_Os10g10510Os.6227.2.S1_x_at1/1110+5560629..5561988hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8414.1.S1_at--206--2951Chr10:5537947..5537971 (25 bp)
AAGGCTGCTTGTTTGGATCTGGAAG
LOC_Os10g10490
OsAffx.8414.1.S1_at--730--4932Chr10:5538002..5538026 (25 bp)
GCTTGGCTCCTCTCTTTAGATAGAT
LOC_Os10g10490
OsAffx.8414.1.S1_at--1137--8811Chr10:5538042..5538066 (25 bp)
TGTTGGATCGCAGGCACTGTGCTAA
LOC_Os10g10490
OsAffx.8414.1.S1_at--1024--6411Chr10:5538077..5538101 (25 bp)
GATCTCACATGTGTTCTTTGCTATG
LOC_Os10g10490
OsAffx.8414.1.S1_at--188--2391Chr10:5538119..5538143 (25 bp)
AAACTGCACATCTTCTTTGCTTGTC
LOC_Os10g10490
OsAffx.8414.1.S1_at--590--10271Chr10:5538134..5538158 (25 bp)
TTTGCTTGTCCTTATAGCCTCCGAT
LOC_Os10g10490
OsAffx.8414.1.S1_at--528--3791Chr10:5538152..5538176 (25 bp)
CTCCGATGTTGGCAGCTTTTGGGTT
LOC_Os10g10490
OsAffx.8414.1.S1_at--847--9571Chr10:5538201..5538225 (25 bp)
TCTTCCAGATGGTTGTTCTAGCAAG
LOC_Os10g10490
OsAffx.8414.1.S1_at--718--511Chr10:5538228..5538252 (25 bp)
ATCGCTTTGGTATGAAGGGCTTTCT
LOC_Os10g10490
OsAffx.8414.1.S1_at--426--8051Chr10:5538253..5538277 (25 bp)
GGAGATCTTCTTTATAGCTGCCTGG
LOC_Os10g10490
OsAffx.8414.1.S1_at--964--5271Chr10:5538313..5538337 (25 bp)
GAATGTTCCTCTGACTTTTCATGGA
LOC_Os10g10490
Target Sequence 
AAGGCTGCTTGTTTGGATCTGGAAGACAAAGTGTGTGATCAAAATCAAAGTGTTTGCTTGGCTCCTCTCTTTAGATAGAT
TTAATACAAGGGACATGTTGGATCGCAGGCACTGTGCTAAGGAGAATGATGATCTCACATGTGTTCTTTGCTATGGGGAT
TTAAGAGAAACAAAACTGCACATCTTCTTTGCTTGTCCTTATAGCCTCCGATGTTGGCAGCTTTTGGGTTTCCATTGGTT
TCTCAATTTAAATTTCTTCCAGATGGTTGTTCTAGCAAGAAATCGCTTTGGTATGAAGGGCTTTCTGGAGATCTTCTTTA
TAGCTGCCTGGTACATTTGGAAACAAAGAAATGGCATGATTTTTCAGAATGTTCCTCTGACTTTTCATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis