Browse Element(s) Details


OsAffx.8444.1.S1_at

Description gb:NM_195098.1
DB_XREF= gi:37531555
TID=OsAffx.8444.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0011A24.4), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0937011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09310NANA10+4798368..4802291retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09320NANA10+4806686..4807186transposon protein, putative, unclassified
LOC_Os10g09330NANA10+4809446..4810262hypothetical protein
LOC_Os10g09340OsAffx.6614.1.S1_at11/1110+4810687..4811333hypothetical protein
LOC_Os10g09350Os.46012.2.S1_x_at10/1110+4812352..4818440retrotransposon protein, putative, unclassified
LOC_Os10g09350Os.46012.3.S1_x_at7/1110+4812352..4818440retrotransposon protein, putative, unclassified
LOC_Os10g09350Os.27088.1.A1_x_at7/1110+4812352..4818440retrotransposon protein, putative, unclassified
LOC_Os10g09360OsAffx.8445.1.S1_at8/1110+4821396..4821809Jasmonate O-methyltransferase, putative
LOC_Os10g09370OsAffx.8444.1.S1_at11/1110+4824337..4826010retrotransposon protein, putative, unclassified
LOC_Os10g09380NANA10+4826562..4829184retrotransposon protein, putative, unclassified
LOC_Os10g09390NANA10+4829530..4830924hypothetical protein
LOC_Os10g09400NANA10+4834172..4840889retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09410NANA10+4844029..4845102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09430NANA10+4849994..4854047retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8444.1.S1_at--217--71Chr10:4825339..4825363 (25 bp)
ATTGCAAGCTTGGTCTACTGTCAGC
LOC_Os10g09370
OsAffx.8444.1.S1_at--276--991Chr10:4825300..4825324 (25 bp)
AGGTCTACCTAAATCTGGCAAGTTT
LOC_Os10g09370
OsAffx.8444.1.S1_at--336--2831Chr10:4825233..4825257 (25 bp)
AAGTTCATAGCCTTGTCTCATCCTT
LOC_Os10g09370
OsAffx.8444.1.S1_at--479--5271Chr10:4825154..4825178 (25 bp)
GAATGCCCAGGGTAATCATCTCAGA
LOC_Os10g09370
OsAffx.8444.1.S1_at--503--7531Chr10:4825102..4825126 (25 bp)
GTGGCAGGAACTTTTCAGGCTAGCT
LOC_Os10g09370
OsAffx.8444.1.S1_at--250--10411Chr10:4824610..4824634 (25 bp)
TTTTGGTCCTTACCGAGTGCTGGAA
LOC_Os10g09370
OsAffx.8444.1.S1_at--594--9011Chr10:4824577..4824601 (25 bp)
TGCAGTAGCCTACCGTTTGGAATTA
LOC_Os10g09370
OsAffx.8444.1.S1_at--62--8211Chr10:4824559..4824583 (25 bp)
GGAATTACCTCCTGGAAGCTTGATC
LOC_Os10g09370
OsAffx.8444.1.S1_at--429--8611Chr10:4824527..4824551 (25 bp)
TGGTGCACGTGTCCTTGCTCAAGAA
LOC_Os10g09370
OsAffx.8444.1.S1_at--950--4271Chr10:4824429..4824453 (25 bp)
CCTGAAGCTGTTTTGCGTCGGCAAT
LOC_Os10g09370
OsAffx.8444.1.S1_at--779--6691Chr10:4824381..4824405 (25 bp)
GTTCCCTATGGTCTGATTCGCTGGA
LOC_Os10g09370
Target Sequence 
ATTGCAAGCTTGGTCTACTGTCAGCTTGGATTTTATTGAAGGTCTACCTAAATCTGGCAAGTTTGATACCATACTGGCAG
TGGTGGACAAGTTTACCAAGTTTGCCAAGTTCATAGCCTTGTCTCATCCTTTCACAGCTTTGACTGTAGCTCAAGCTTTT
ATCCAAAATGTGTATGAGATGTTTGGAATGCCCAGGGTAATCATCTCAGACCGGGACAGGATGTTTACAAGTGCATTGTG
GCAGGAACTTTTCAGGCTAGCTGATGCACAGTATTGGTACAATACCTCCAACCACAGCACTCTGGCAAAAAGGTCATGCC
AGAAGCTCAGTTTCCGCTATTTTGGTCCTTACCGAGTGCTGGAAAGGGTGGGTGCAGTAGCCTACCGTTTGGAATTACCT
CCTGGAAGCTTGATCCATCTAGTGGTGCACGTGTCCTTGCTCAAGAAAATGGTGAAACCCGGCACCCAGGAACAGAATGT
TCAGCCTGAAGCTGTTTTGCGTCGGCAATTGATCAAGCGAGGTGGTGCGGCGGTTCCCTATGGTCTGATTCGCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis