Browse Element(s) Details


OsAffx.8469.1.A1_x_at

Description gb:NM_194998.1
DB_XREF= gi:37531355
TID=OsAffx.8469.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0089D15.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g139704/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g053403/11retrotransposon protein, putative, unclassified
LOC_Os04g053303/11Protein kinase domain containing protein
LOC_Os01g588201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g032501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g200601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g150001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g13950OsAffx.30942.1.S1_at5/119+8214131..8214669hypothetical protein
LOC_Os09g13960OsAffx.22452.1.S1_x_at1/119+8225665..8226157retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13970Os.10731.1.A1_a_at11/119+8227447..8230159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13970Os.46610.1.S1_x_at5/119+8227447..8230159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13970OsAffx.8469.1.A1_x_at4/119+8227447..8230159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13970Os.48015.1.A1_x_at3/119+8227447..8230159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13970Os.45173.1.S1_x_at2/119+8227447..8230159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13970Os.53292.1.S1_at2/119+8227447..8230159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13970Os.53292.1.S1_x_at1/119+8227447..8230159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13970Os.47999.2.A1_x_at1/119+8227447..8230159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13980OsAffx.22947.1.S1_x_at1/119+8233601..8236630retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g13990Os.24831.4.S1_x_at1/119+8243988..8245259retrotransposon protein, putative, unclassified
LOC_Os09g14000NANA9+8246630..8247257retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8469.1.A1_x_at--73--7255Chr12:11665492..11665910 (25 bp)
GTCCGTAGCGCCCTAGCTCCGTGTG
LOC_Os12g20060
OsAffx.8469.1.A1_x_at--110--10671Chr10:4201595..4201619 (25 bp)
TTCCGGTCGTAGTCGTCACTCGGGA
NONE
OsAffx.8469.1.A1_x_at--884--1712Chr10:4201612..4201636 (25 bp)
ACTCGGGAAGGCCACCATCGGGATC
NONE
OsAffx.8469.1.A1_x_at--554--4153Chr10:4201834..4201858 (25 bp)
CGCGCTGTCATTCGCCGGCGAGCAT
NONE
OsAffx.8469.1.A1_x_at--69--89513Chr12:8213189..8213213 (25 bp)
TGACGTCATCGCTGCCGTCATCGCT
NONE
OsAffx.8469.1.A1_x_at--802--5316Chr12:12672137..12672161 (25 bp)
ATCGCTGCCGTCATCGCTGACGTCA
NONE
OsAffx.8469.1.A1_x_at--824--5329Chr12:8213208..8213232 (25 bp)
ATCGCTGACGTCATCGTTGCCGTTC
NONE
OsAffx.8469.1.A1_x_at--752--5110Chr12:17848210..17848234 (25 bp)
ATCGTTGCCGTTCCCCGTGAGCCGG
NONE
OsAffx.8469.1.A1_x_at--1111--3772Chr10:4201964..4201988 (25 bp)
CTCGGCAGTCCGTTTTGGATAGGGT
NONE
OsAffx.8469.1.A1_x_at--493--3453Chr12:10591273..10591294 (22 bp)
CAGTCCGTTTTGGATAGGGTTGATC
NONE
OsAffx.8469.1.A1_x_at--750--103982Chr12:2063630..2063654 (25 bp)
TTTTGGATAGGGTTGATCTCGGCCG
NONE
Target Sequence 
GTCCGTAGCGCCCTAGCTCCGTGTGCCCTAGCGCCGCCGTCGCCGCCGTCGCTCCAGCCGTGCGCCGCCGCCGTTCCGGT
CGTAGTCGTCACTCGGGAAGGCCACCATCGGGATCGCCAAGTCGTCGCCGTCCCCGTCCGCCCCTTCGCCGCCGCCGAAG
ATCGCCGGAGCACCGTCGCCGCCGTCGACCCGATCTCCGCCGCCGCTTCTTCCTCGTCGCCGGCGCCGTCCGTTGCTTTT
CCGCCGTTGTTTTGGTCACCGGTGAGTTCGCCGCGTCGCCCTCTACCCGTTGGTGCCCTCCGTTCGCGTCGCCGCGCTGT
CATTCGCCGGCGAGCATGCGCGTCCGAGCCGCCCGAGTCGCCGCCGGTGCTGACGTCATCGCTGCCGTCATCGCTGACGT
CATCGTTGCCGTTCCCCGTGAGCCGGTCGTGGACCGTTCGATCTCGGCAGTCCGTTTTGGATAGGGTTGATCTCGGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8469.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis