Browse Element(s) Details


OsAffx.8585.1.S1_at

Description tigr:9638.m00028
TID=OsAffx.8585.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0126011/11retrotransposon, putative, centromere-specific
LOC_Os12g185001/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01230OsAffx.20820.1.S1_at11/1110+137336..138703retrotransposon protein, putative, unclassified
LOC_Os10g01240OsAffx.20819.1.S1_at11/1110+144062..144352VQ motif family protein
LOC_Os10g01250NANA10+149922..150228hypothetical protein
LOC_Os10g01260OsAffx.8585.1.S1_at11/1110+153666..155744retrotransposon, putative, centromere-specific
LOC_Os10g01260Os.52447.1.S1_x_at1/1110+153666..155744retrotransposon, putative, centromere-specific
LOC_Os10g01274OsAffx.30220.2.S1_x_at11/1110+159237..168736retrotransposon protein, putative, unclassified
LOC_Os10g01274OsAffx.30220.1.S1_at11/1110+159237..168736retrotransposon protein, putative, unclassified
LOC_Os10g01290Os.46539.1.S1_at11/1110+171016..172684expressed protein
LOC_Os10g01300NANA10+174729..176764retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01310NANA10+178209..178553hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8585.1.S1_at--809--6551Chr10:155639..155663 (25 bp)
GATTCTAATGAGGTACGTGATGACG
LOC_Os10g01260
OsAffx.8585.1.S1_at--204--712Chr12:10692984..10693003 (20 bp)
ATGAGGTACGTGATGACGTTCTAAC
LOC_Os12g18500
OsAffx.8585.1.S1_at--96--6311Chr10:155621..155645 (25 bp)
GATGACGTTCTAACTAAGATCAAAT
LOC_Os10g01260
OsAffx.8585.1.S1_at--610--5911Chr10:155543..155567 (25 bp)
GAGCTAGCGGTTGGCAGAGAATTTA
LOC_Os10g01260
OsAffx.8585.1.S1_at--220--3711Chr10:155540..155564 (25 bp)
CTAGCGGTTGGCAGAGAATTTAAAA
LOC_Os10g01260
OsAffx.8585.1.S1_at--802--2431Chr10:155518..155542 (25 bp)
AAAAGCATGGTTTAGCTGAGAAACA
LOC_Os10g01260
OsAffx.8585.1.S1_at--271--551Chr10:155023..155047 (25 bp)
ATCCCATTGTTCACAATCCAAATCG
LOC_Os10g01260
OsAffx.8585.1.S1_at--659--8791Chr10:155016..155040 (25 bp)
TGTTCACAATCCAAATCGAGGCACC
LOC_Os10g01260
OsAffx.8585.1.S1_at--704--9911Chr10:154745..154769 (25 bp)
TACTGTTAATTCTTACTGTGCGGAT
LOC_Os10g01260
OsAffx.8585.1.S1_at--596--3151Chr10:154738..154762 (25 bp)
AATTCTTACTGTGCGGATTTTATGC
LOC_Os10g01260
OsAffx.8585.1.S1_at--98--1971Chr10:154731..154755 (25 bp)
ACTGTGCGGATTTTATGCATGTTAT
LOC_Os10g01260
Target Sequence 
GATTCTAATGAGGTACGTGATGACGTTCTAACTAAGATCAAATTTGCACTACCTTATTTCAAAGGAAATTATGATCCTCA
TGCTTACATTTATTGGGAGCTAGCGGTTGGCAGAGAATTTAAAAAGCATGGTTTAGCTGAGAAACAAAAGGAAATGCATA
ATCACGGAAAAGATGAGAGAAACATGAATGAGCCGCCAATCCCATTGTTCACAATCCAAATCGAGGCACCTCCATCATCT
GAACAAATCATCAAAGGTAAACTAAATGGTGCTGAAACTAATCAAGTAGAGCAACCATTAGTGGAACCAACTGCTGAGAC
TCCTTTGTCACAAGTTGGTTTGTTTGTTGTTCCTTGTGATAAAGATGAGTTGAGTGATAATGATTCACATATATCCATAC
CACAACTAGTGAATGAACATGCTATTCCTACTGTTAATTCTTACTGTGCGGATTTTATGCATGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis