Browse Element(s) Details


OsAffx.8801.1.S1_at

Description gb:XM_353902.1
DB_XREF= gi:34915595
TID=OsAffx.8801.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g074103/11retrotransposon protein, putative, unclassified
LOC_Os07g263503/11hypothetical protein
LOC_Os10g121303/11expressed protein
LOC_Os11g111402/11transposon protein, putative, unclassified
LOC_Os05g223902/11retrotransposon, putative, centromere-specific
LOC_Os03g623142/11retrotransposon protein, putative, LINE subclass
LOC_Os02g075001/11hypothetical protein
LOC_Os11g256901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07380OsAffx.30330.1.S1_at9/1110+3875801..3880800expressed protein
LOC_Os10g07390OsAffx.30331.1.S1_at11/1110+3887830..3889046hypothetical protein
LOC_Os10g07400Os.11024.1.S1_at11/1110+3892249..3896819NB-ARC domain containing protein, expressed
LOC_Os10g07410OsAffx.380.1.S1_at11/1110+3901025..3907698retrotransposon protein, putative, unclassified
LOC_Os10g07410OsAffx.8801.1.S1_at3/1110+3901025..3907698retrotransposon protein, putative, unclassified
LOC_Os10g07410OsAffx.1283.1.S1_at2/1110+3901025..3907698retrotransposon protein, putative, unclassified
LOC_Os10g07420OsAffx.25595.2.S1_x_at3/1110+3910457..3910903hypothetical protein
LOC_Os10g07420OsAffx.25595.2.S1_at2/1110+3910457..3910903hypothetical protein
LOC_Os10g07430Os.46567.1.S1_at11/1110+3917158..3919926expressed protein
LOC_Os10g07440NANA10+3925348..3926042expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8801.1.S1_at--574--94321Chr12:18386102..18386123 (22 bp)
TCGGGACTCTATCCATGTGCGGCAA
NONE
OsAffx.8801.1.S1_at--505--763130Chr12:18386102..18386125 (24 bp)
GGGACTCTATCCATGTGCGGCAATC
NONE
OsAffx.8801.1.S1_at--818--16739Chr12:9226069..9226093 (25 bp)
ACCTCAATTCAACCCGATGTCATAC
NONE
OsAffx.8801.1.S1_at--236--31524Chr12:9226073..9226097 (25 bp)
CAATTCAACCCGATGTCATACACCA
NONE
OsAffx.8801.1.S1_at--701--8213Chr07:1042371..1042395 (25 bp)
GGAATCGGCTGCATTGGCTTACCTA
NONE
OsAffx.8801.1.S1_at--1088--8315Chr08:18979674..18979715 (24 bp)
GGCTGCATTGGCTTACCTAGTCCGA
NONE
OsAffx.8801.1.S1_at--821--19Chr12:12750873..12750893 (21 bp)
ATTGGCTTACCTAGTCCGACTCAGA
NONE
OsAffx.8801.1.S1_at--515--492Chr07:1042432..1042456 (25 bp)
ATCTGGACTCCAACCGATTCCTGTT
NONE
OsAffx.8801.1.S1_at--1019--1771Chr07:1042444..1042468 (25 bp)
ACCGATTCCTGTTCTGTTCCCAAAT
NONE
OsAffx.8801.1.S1_at--230--3871Chr07:1042457..1042481 (25 bp)
CTGTTCCCAAATCGATCTCTGCCTT
NONE
OsAffx.8801.1.S1_at--896--6412Chr07:1042470..1042494 (25 bp)
GATCTCTGCCTTCGACTCCACTTTG
NONE
Target Sequence 
TCGGGACTCTATCCATGTGCGGCAATCATCTTGAAGCACCTCAATTCAACCCGATGTCATACACCAAGTTGTATTGTCGG
AATCGGCTGCATTGGCTTACCTAGTCCGACTCAGACTCAGCCGATCCTAATCGTAGCCGATCTGGACTCCAACCGATTCC
TGTTCTGTTCCCAAATCGATCTCTGCCTTCGACTCCACTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis