Browse Element(s) Details


OsAffx.8939.1.S1_at

Description gb:NM_193658.1
DB_XREF= gi:34914399
GEN=B1168H06.22
TID=OsAffx.8939.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1168H06.22 (B1168H06.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g100405/11hypothetical protein
LOC_Os09g091704/11hypothetical protein
LOC_Os09g088104/11hypothetical protein
LOC_Os07g352504/11hypothetical protein
LOC_Os01g388004/11hypothetical protein
LOC_Os05g444403/11hypothetical protein
LOC_Os02g312593/11
LOC_Os04g085403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g140402/11hypothetical protein
LOC_Os09g211892/11
LOC_Os05g444502/11transposon protein, putative, unclassified
LOC_Os02g260142/11Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os11g125502/11hypothetical protein
LOC_Os09g215302/11hypothetical protein
LOC_Os02g142401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09990OsAffx.25948.1.S1_at11/114+5357271..5359192hypothetical protein
LOC_Os04g10000NANA4+5360317..5361507oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g10010Os.7434.1.S1_at11/114+5365731..5367224oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g10020Os.47463.1.S1_x_at6/114+5368855..5372552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10020Os.14491.2.S1_x_at4/114+5368855..5372552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10030NANA4+5375935..5379267transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10040OsAffx.8939.1.S1_x_at5/114+5382592..5384370hypothetical protein
LOC_Os04g10040OsAffx.8939.1.S1_at5/114+5382592..5384370hypothetical protein
LOC_Os04g10040OsAffx.1436.1.S1_x_at1/114+5382592..5384370hypothetical protein
LOC_Os04g10050OsAffx.13742.1.S1_at11/114+5399524..5399949hypothetical protein
LOC_Os04g10060Os.24822.1.A1_at11/114+5408356..5414032Terpene synthase family, metal binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016106biological_processsesquiterpenoid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8939.1.S1_at--766--531100Chr12:5367623..5367647 (25 bp)
GAAGGTGAAATAATAAGTCGGCGAA
NONE
OsAffx.8939.1.S1_at--567--71792Chr12:20366193..20366217 (25 bp)
GTCGGCGAAAACATAATCATCCATT
NONE
OsAffx.8939.1.S1_at--972--4163Chr12:11563671..11563695 (25 bp)
ATCATCCATTAGCAACAGCGGAGAT
NONE
OsAffx.8939.1.S1_at--410--89992Chr12:16419285..16419315 (25 bp)
TGAAGCAGAGCTGTTGTAGATGCTT
NONE
OsAffx.8939.1.S1_at--1065--8791Chr01:18875011..18875035 (25 bp)
TGTTGTTGTCCAGCTCGTCCAAACT
NONE
OsAffx.8939.1.S1_at--974--8811Chr01:18875014..18875038 (25 bp)
TGTTGTCCAGCTCGTCCAAACTGAA
NONE
OsAffx.8939.1.S1_at--690--10811Chr01:18875016..18875040 (25 bp)
TTGTCCAGCTCGTCCAAACTGAAAT
NONE
OsAffx.8939.1.S1_at--589--7271Chr01:18875018..18875042 (25 bp)
GTCCAGCTCGTCCAAACTGAAATAT
NONE
OsAffx.8939.1.S1_at--925--4351Chr01:18875020..18875044 (25 bp)
CCAGCTCGTCCAAACTGAAATATTT
NONE
OsAffx.8939.1.S1_at--228--66569Chr12:20286626..20286650 (25 bp)
GTTGAAGTAGAATGTCTGTTCCGAA
NONE
OsAffx.8939.1.S1_at--269--89367Chr12:20286628..20286652 (25 bp)
TGAAGTAGAATGTCTGTTCCGAAGC
NONE
Target Sequence 
GAAGGTGAAATAATAAGTCGGCGAAAACATAATCATCCATTAGCAACAGCGGAGATGTCAGGGTCGATGAAGCAGAGCTG
TTGTAGATGCTTCACTTGGAGGAGAGTTGATGTTGTTGTCCAGCTCGTCCAAACTGAAATATTTGTTGAAGTAGAATGTC
TGTTCCGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8939.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis