Browse Element(s) Details


Os.24822.1.A1_at

Description gb:AK119327.1
DB_XREF= gi:37988950
TID=Os.24822.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24822 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-131-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-B02, full insert sequence.
FL= gb:AK119327.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1006011/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10040OsAffx.8939.1.S1_x_at5/114+5382592..5384370hypothetical protein
LOC_Os04g10040OsAffx.8939.1.S1_at5/114+5382592..5384370hypothetical protein
LOC_Os04g10040OsAffx.1436.1.S1_x_at1/114+5382592..5384370hypothetical protein
LOC_Os04g10050OsAffx.13742.1.S1_at11/114+5399524..5399949hypothetical protein
LOC_Os04g10060Os.24822.1.A1_at11/114+5408356..5414032Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g10070OsAffx.22699.1.S1_x_at3/114+5417482..5421382retrotransposon protein, putative, unclassified
LOC_Os04g10080OsAffx.1196.1.S1_at2/114+5424186..5425436hypothetical protein
LOC_Os04g10080OsAffx.1196.1.S1_x_at1/114+5424186..5425436hypothetical protein
LOC_Os04g10090NANA4+5426303..5426749hypothetical protein
LOC_Os04g10100NANA4+5430295..5437020retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0009899molecular_functionent-kaurene synthase activity
GO:0009905molecular_functionent-copalyl diphosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24822.1.A1_at--694--3491Chr04:5409226..5409250 (25 bp)
CATGGGACAAAATCTCTGGGAGGAC
LOC_Os04g10060
Os.24822.1.A1_at--1069--8591Chr04:5409151..5409175 (25 bp)
TGGTCGTCTCCAGAATGATATTCAA
LOC_Os04g10060
Os.24822.1.A1_at--374--8231Chr04:5408788..5408812 (25 bp)
GGCAAACTGAACAGTGTGTCACTGC
LOC_Os04g10060
Os.24822.1.A1_at--718--6271Chr04:5408746..5408770 (25 bp)
GATGTCATGTCAGTAGAAGAGGCTA
LOC_Os04g10060
Os.24822.1.A1_at--672--9831Chr04:5408712..5408736 (25 bp)
TAAACGAGTCTATATCATCATGTAG
LOC_Os04g10060
Os.24822.1.A1_at--582--5751Chr04:5408656..5408680 (25 bp)
GACGGTGTCATTCCTAAATCATGCA
LOC_Os04g10060
Os.24822.1.A1_at--594--1411Chr04:5408607..5408631 (25 bp)
AGACAAGCCATGTGTTCTACTCTCA
LOC_Os04g10060
Os.24822.1.A1_at--194--6731Chr04:5408594..5408618 (25 bp)
GTTCTACTCTCAGGCCGATGGATTT
LOC_Os04g10060
Os.24822.1.A1_at--332--4051Chr04:5408579..5408603 (25 bp)
CGATGGATTTTCCTCGCCGAAGGAA
LOC_Os04g10060
Os.24822.1.A1_at--730--551Chr04:5408437..5408461 (25 bp)
ATCCGCTTTGTAACTCTAAGGTAGC
LOC_Os04g10060
Os.24822.1.A1_at--779--10171Chr04:5408403..5408427 (25 bp)
TATAGCCAGGCGAGAGTTGTAATAT
LOC_Os04g10060
Target Sequence 
CATGGGACAAAATCTCTGGGAGGACATCGTGAAAAATGCAGAGTATGATGAGTTGTTTAGACTAATGAACACATGTGGTC
GTCTCCAGAATGATATTCAAAGCTTTGAGAGGGAATGCNAGGATGGCAAACTGAACAGTGTGTCACTGCTTGTTCTTGAC
AGCAAAGATGTCATGTCAGTAGAAGAGGCTAAAGAGGCGATAAACGAGTCTATATCATCATGTAGAAGAGAGTTGCTACG
GTTGGTTGTTAGAGAAGACGGTGTCATTCCTAAATCATGCAAGGAGATGTTCTGGAATCNTTACAAGACAAGCCATGTGT
TCTACTCTCAGGCCGATGGATTTTCCTCGCCGAAGGAAATGATGGGTGCTATGAATGGAGTAATCTTTGAGCCACTGAAA
ACTAGAGGCAACTAGTCCATNTTAATTTGGCTGAGAAATTTTNAAAAAAAAGGTTTTCCTACGGTATCGCGAGANATCCG
CTTTGTAACTCTAAGGTAGCTGCCNGTNTTATAGCCAGGCGAGAGTTGTAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24822.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis